BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927651

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G01230.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   630    3e-180


> AT3G01230.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G01240.1); Has 
11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:76655-77411 
REVERSE LENGTH=757
Length=757

 Score =  630 bits (341),  Expect = 3e-180
 Identities = 385/406 (95%), Gaps = 4/406 (1%)
 Strand=Plus/Plus

Query  1    GGGAAAATTAATCTTTAATCATGGCAAAGATCTCCTTTGTGCTTCTCGTTGTCACACTTA  60
            ||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||
Sbjct  75   GGGAAAATTAATCTTTAATCATGGCAAAGATCTCCTTTGCGCTTGTCGTTGTCGCTCTTA  134

Query  61   TTGTCTTTCAACAAGTCTGTGAGGCTCATCGTCCGATAGATTTCAACGAAGAAGTACTTG  120
            |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct  135  TTGTCTTTCAACAAGTATCTGAGGCTCATCGTCCGATAGATTTCAACGAAGAAGTACTTG  194

Query  121  AAAAGGACTTACATGAAGCCAAAGACTTGATAGAAGAAGACTTGAAAGAAAAAGAAACGA  180
            |||||||||| ||||||||||| |||||||||||||||||||||| ||| ||||||||||
Sbjct  195  AAAAGGACTTGCATGAAGCCAAGGACTTGATAGAAGAAGACTTGAGAGAGAAAGAAACGA  254

Query  181  GCATCAGGAACTTGGAAAGCGAGGTTAGTTTGTTAACCAAATCTGAGATGATGCTTACTC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  255  GCATCAGGAACTTGGAAAGCGAGGTTAGTTTGTTAACCAAATCTGAGATGATGCTTACTC  314

Query  241  AGCTCGAACATGCTTACAAAAATGG--GAAGAGTCTTGAGCGTTTCGGGAAAAGACTCAA  298
            ||||||||| |||||||||||||||  ||| | |||||||| ||||||||||| ||||||
Sbjct  315  AGCTCGAACTTGCTTACAAAAATGGTAGAA-A-TCTTGAGCATTTCGGGAAAAAACTCAA  372

Query  299  GAAATTCAACAGGAGGATCAAGCGGGCTCCTGAGGAAGTGAGGTACGTTTCCATTATCCA  358
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  373  GAAATTCAACAGGAGGATCAAGCGGGCTCCTGAGGAAGTGAGATACGTTTCCATCATCCA  432

Query  359  ATCCATTTTGAAGGATTTGGGATTAAACGGAGGGAGAAATTaaaaa  404
             |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  433  GTCCATTTTGAAGGATTTGGGATTAAACGGAGGGAGACATTAAAAA  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19956296353


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5