BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927651 Length=421 Score E Sequences producing significant alignments: (Bits) Value AT3G01230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 630 3e-180 > AT3G01230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01240.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:76655-77411 REVERSE LENGTH=757 Length=757 Score = 630 bits (341), Expect = 3e-180 Identities = 385/406 (95%), Gaps = 4/406 (1%) Strand=Plus/Plus Query 1 GGGAAAATTAATCTTTAATCATGGCAAAGATCTCCTTTGTGCTTCTCGTTGTCACACTTA 60 ||||||||||||||||||||||||||||||||||||||| |||| |||||||| | |||| Sbjct 75 GGGAAAATTAATCTTTAATCATGGCAAAGATCTCCTTTGCGCTTGTCGTTGTCGCTCTTA 134 Query 61 TTGTCTTTCAACAAGTCTGTGAGGCTCATCGTCCGATAGATTTCAACGAAGAAGTACTTG 120 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 135 TTGTCTTTCAACAAGTATCTGAGGCTCATCGTCCGATAGATTTCAACGAAGAAGTACTTG 194 Query 121 AAAAGGACTTACATGAAGCCAAAGACTTGATAGAAGAAGACTTGAAAGAAAAAGAAACGA 180 |||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||| Sbjct 195 AAAAGGACTTGCATGAAGCCAAGGACTTGATAGAAGAAGACTTGAGAGAGAAAGAAACGA 254 Query 181 GCATCAGGAACTTGGAAAGCGAGGTTAGTTTGTTAACCAAATCTGAGATGATGCTTACTC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 GCATCAGGAACTTGGAAAGCGAGGTTAGTTTGTTAACCAAATCTGAGATGATGCTTACTC 314 Query 241 AGCTCGAACATGCTTACAAAAATGG--GAAGAGTCTTGAGCGTTTCGGGAAAAGACTCAA 298 ||||||||| ||||||||||||||| ||| | |||||||| ||||||||||| |||||| Sbjct 315 AGCTCGAACTTGCTTACAAAAATGGTAGAA-A-TCTTGAGCATTTCGGGAAAAAACTCAA 372 Query 299 GAAATTCAACAGGAGGATCAAGCGGGCTCCTGAGGAAGTGAGGTACGTTTCCATTATCCA 358 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 373 GAAATTCAACAGGAGGATCAAGCGGGCTCCTGAGGAAGTGAGATACGTTTCCATCATCCA 432 Query 359 ATCCATTTTGAAGGATTTGGGATTAAACGGAGGGAGAAATTaaaaa 404 |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 433 GTCCATTTTGAAGGATTTGGGATTAAACGGAGGGAGACATTAAAAA 478 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19956296353 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5