BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927652
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01220.1 | Symbols: ATHB20, HB20 | homeobox protein 20 | chr... 1461 0.0
AT5G15150.1 | Symbols: ATHB-3, HAT7, ATHB3, HB-3 | homeobox 3 |... 414 6e-115
> AT3G01220.1 | Symbols: ATHB20, HB20 | homeobox protein 20 | chr3:73481-75538
FORWARD LENGTH=1222
Length=1222
Score = 1461 bits (791), Expect = 0.0
Identities = 865/898 (96%), Gaps = 15/898 (2%)
Strand=Plus/Plus
Query 6 TTGCTGGAATACATACATGTATGTGTTTGATCCAACAACAGAAGCTGGATTGAGATTAGA 65
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 TTGGTGGAATACATACATGTATGTGTTTGATCCAACAACAGAAGCTGGATTGAGATTAGA 162
Query 66 GATGGCGTTTCCTCAACATGGTTTTATGTTCCAACAACTTCATGAAGACAACAGTCAAGA 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GATGGCGTTTCCTCAACATGGTTTTATGTTCCAACAACTTCATGAAGACAACAGTCAAGA 222
Query 126 TCAACTACCTTCTTGTCCTCCTCATCTCTTCAATGGAGGAGGAAACTACATGATGAACAG 185
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TCAGCTCCCTTCTTGTCCTCCTCATCTCTTCAATGGAGGAGGAAACTACATGATGAACAG 282
Query 186 ATCTATGTCTTTAATGAACGTGCAAGAAGATCATAATCAAACCTTGGATGAGGAGAATCT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 ATCTATGTCTTTAATGAACGTGCAAGAAGATCATAATCAAACCTTGGATGAGGAGAATCT 342
Query 246 ATCAGACGATGGGGCACATACTATGCTTGGG-GAGAAGAAGAAGAGGCTGCAATTAGAGC 304
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 343 ATCAGACGATGGGGCACATACTATGCT-GGGAGAGAAGAAGAAGAGGCTGCAATTAGAGC 401
Query 305 AAGTTAAGGCATTAGAGAAGAGCTTCGAGCTTGGGAACAAGCTGGAGCCAGAGAGGAAGA 364
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 402 AAGTTAAGGCATTAGAGAAGAGCTTTGAGCTTGGTAACAAGCTGGAGCCAGAGAGGAAGA 461
Query 365 TACAACTAGCTAAAGCATTAGGGATGCAACCGAGACAGATTGCGATTTGGTTTCAAAACA 424
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 462 TACAACTAGCTAAAGCATTAGGGATGCAACCAAGACAGATCGCGATTTGGTTTCAAAACA 521
Query 425 GGAGAGCTAGGTGGAAGACTAGACAGCTCGAGAGAGATTATGATTCACTCAAGAAACAGT 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GGAGAGCTAGGTGGAAGACTAGACAGCTCGAGAGAGATTATGATTCACTCAAGAAACAGT 581
Query 485 TTGAGTCTCTTAAATCCGACAATGATTCTCTACTTGCCTACAACAAGAAACTCCTTGCTG 544
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 582 TTGAGTCTCTTAAATCCGACAATGCTTCTCTACTTGCCTATAACAAGAAACTCCTTGCTG 641
Query 545 AGGTAATGGCTTTAAAGAACAAAGAATGTAATGAAGGAAACATTA-TAAAGAGAGAAGCA 603
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 642 AGGTAATGGCTTTAAAGAACAAAGAATGTAATGAAGGAAACAT-AGTAAAGAGAGAAGCA 700
Query 604 GAAGCTTCATGGAGCAACAATGGAAGCACAGAGAATAGTTCAGACATCAATCTAGAGATG 663
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 701 GAAGCTTCATGGAGCAACAACGGAAGCACAGAGAATAGTTCAGACATCAATCTGGAGATG 760
Query 664 CCTAGAGAGACCACTACAACACATGTGAACACGATCAAAGACCTTTTCCCTTCATCGATT 723
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 761 CCTAGAGAGACCATTACAACACATGTGAACACGATCAAAGACCTATTCCCTTCATCGATT 820
Query 724 CGATCATCTGCACATGATGATCAG-A--ATCA---TCATGAAATAGTTCAAGAAGAAAGC 777
||||||||||||||||||||| | | |||| |||||||||||||||||||||||||
Sbjct 821 CGATCATCTGCACATGATGATGATCATCATCAGAATCATGAAATAGTTCAAGAAGAAAGC 880
Query 778 CTTTGTAACATGTTTAATGGCATTGATGAAACGAC-CTCGGCTGGTTACTGGGCATGGTC 836
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 881 CTTTGTAACATGTTTAATGGCATTGATGAAACGACGC-CGGCTGGTTACTGGGCATGGTC 939
Query 837 TGACCCAAACCACAACCACCACCACCA---GTTCAACTGATTCGTGATCCTGAAGCTC 891
||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||
Sbjct 940 TGACCCAAACCACAACCACCACCACCACCAGTTCAACTGATTCATGATTCTAAAGCTC 997
> AT5G15150.1 | Symbols: ATHB-3, HAT7, ATHB3, HB-3 | homeobox 3
| chr5:4913699-4915892 REVERSE LENGTH=1480
Length=1480
Score = 414 bits (224), Expect = 6e-115
Identities = 502/627 (80%), Gaps = 55/627 (9%)
Strand=Plus/Plus
Query 244 CTATCAGACGATGGGGCACATACT-ATGCTT-GGGGAGAAGAAGAAGAGGCTGCAA-TTA 300
||||||||||||||| |||||| | ||| || || |||||||||||||||||| || |||
Sbjct 590 CTATCAGACGATGGGTCACATA-TGATG-TTAGGAGAGAAGAAGAAGAGGCTG-AATTTA 646
Query 301 GAGCAAGTTAAGGCATTAGAGAAGAGCTTCGAGCTTGGGAACAAGCTGGAGCCAGAGAGG 360
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 647 GAGCAAGTTAGGGCATTAGAGAAGAGCTTCGAGCTAGGGAACAAGCTGGAGCCAGAGAGG 706
Query 361 AAGATACAACTAGCTAAAGCATTAGGGAT-GCAACCGAGACAGATTGCGATTTGGTTTCA 419
||||| || || ||||| || ||||| || ||| || || |||||||| || ||||||||
Sbjct 707 AAGATGCAGCTTGCTAAGGCTTTAGG-ATTGCAGCCTAGGCAGATTGCAATATGGTTTCA 765
Query 420 AAACAGGAGAGCTAGGTGGAAGACTA-GACAGCTCGAGAGAGATTATGATTCACTCAAGA 478
||||||||||||||||||||||| | | |||||||||||||| |||||||| ||||| |
Sbjct 766 GAACAGGAGAGCTAGGTGGAAGACAAAG-CAGCTCGAGAGAGACTATGATTCTCTCAAAA 824
Query 479 AACAGTTTGA-GTCTCTT-AAATCCGACAATGATTCTCTACTTGCCTACAACAAGAAACT 536
||||||| || || | || ||||| |||||||||||||| |||||| |||||||||||||
Sbjct 825 AACAGTTCGATGT-T-TTGAAATCGGACAATGATTCTCTTCTTGCCCACAACAAGAAACT 882
Query 537 CCTTGCTGAGGTAATGGCTTTAAAGAA-CAAAGAATGTAATGAAGGA--AACATTATAAA 593
| ||||||| || |||| || ||||| || || |||| ||| | || | || ||
Sbjct 883 ACATGCTGAGTTAGTGGCATTGAAGAAACAC-GACCGTAAAGAATCAGCAA-AG-ATCAA 939
Query 594 GAGAGAA---GCAGAAGCTTCATGGAGCAACAATGGAAGCACAGAGAATAGTTCAGACAT 650
||||||| ||||||||||||||||||||||||||||||||||| |||| | || | |
Sbjct 940 GAGAGAATTCGCAGAAGCTTCATGGAGCAACAATGGAAGCACAGAAAATAAT-CATA-A- 996
Query 651 CAATCTAGAGATGCCTAGAGAGACCACTACAACACATGTGAACACGATCAAAGACCTTTT 710
|||| | || | | ||| | | || | || ||||| || ||||||||| |||||
Sbjct 997 CAATA-ATAGTT-C--AGAC-G-C---TA-ATCA--TGTGAGCATGATCAAAGATCTTTT 1044
Query 711 CCCTTCATCGATTCGATC----ATCTGC-AC-ATGA--TG-ATC-AGAATCATCATGAAA 760
|||||| ||||| ||||| | | || || | || | | | | | | ||||| | |
Sbjct 1045 CCCTTCTTCGATCCGATCCGCGACC-GCGACCACGACCTCTACCCATATTGATCATCAGA 1103
Query 761 TAGTTCAAGA--A-GA--AAGCCTTT-GTAACATGTTTAATGGCATTGATGAAACGACCT 814
| |||||||| | || ||| ||| | || ||||| ||||| |||||||||||||| |
Sbjct 1104 TTGTTCAAGATCAAGATCAAGGGTTTTGCAATATGTTCAATGGTATTGATGAAACGACGT 1163
Query 815 CGGCTGGTTACTGGGCATGGTCTGACC 841
||||| |||| ||||||||| ||||||
Sbjct 1164 CGGCTAGTTATTGGGCATGGCCTGACC 1190
Score = 93.5 bits (50), Expect = 3e-18
Identities = 128/162 (79%), Gaps = 20/162 (12%)
Strand=Plus/Plus
Query 52 GGATTGAGATTAGAGATGGCGTTTCCTCAACATGGTTTTATGTTCCAACAACTTCATGAA 111
||| ||||||| |||||||| |||||||||||||| || ||||| || ||||| ||||||
Sbjct 332 GGACTGAGATTGGAGATGGCCTTTCCTCAACATGGCTTCATGTTTCAGCAACTCCATGAA 391
Query 112 GACAACAG-TCA--A--GA---T---CAA-----CTACCTTCTTGTCCTCCTCATCTCTT 155
||||| | ||| | | | ||| || || ||||||||||||||||||||
Sbjct 392 GACAA-TGCTCATCACTTACCTTCCCCAACCTCTCTCCCCTCTTGTCCTCCTCATCTCTT 450
Query 156 CAATGGAGGAGGA--AA-CTACATGATGAACAGATCTATGTC 194
| ||||||||||| || |||||||||||||||||| |||||
Sbjct 451 CTATGGAGGAGGAGGAAACTACATGATGAACAGATCAATGTC 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43603239596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5