BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927655
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01190.1 | Symbols: | Peroxidase superfamily protein | chr3... 1557 0.0
> AT3G01190.1 | Symbols: | Peroxidase superfamily protein | chr3:67058-68536
REVERSE LENGTH=1203
Length=1203
Score = 1557 bits (843), Expect = 0.0
Identities = 955/1010 (95%), Gaps = 3/1010 (0%)
Strand=Plus/Plus
Query 1 CTAAATATTGTTTTCAGAAAATGGCAGCTTCTAAGCGACTAGTTGTCTCTTGCTTGTTCT 60
||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 41 CTAAAGATT-TTTTAAGAAAATGGCAGCTTCTAAGCGACTAGTTGTCTCTTGCTTGTTCT 99
Query 61 TAGTGTTGTTGTTTGCTCAAGCCAAATCACAAGGTTTGAAAGTAGGGTTCTACAGCAAAA 120
|||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 100 TAGTTTTGTTGTTTGCTCAAGCCAATTCGCAAGGTTTGAAAGTAGGTTTCTACAGCAAAA 159
Query 121 CATGCCCACAAGTCGAGGGTATTGTTAGAAAGGTAGTGTTCGATGCGATGAAGAAAGCAC 180
||||||||||| |||||||||| |||| |||||| ||||||||||||||||| |||||||
Sbjct 160 CATGCCCACAACTCGAGGGTATAGTTAAAAAGGTCGTGTTCGATGCGATGAACAAAGCAC 219
Query 181 CTACAGTTGGTGCTCCTTTGCTTAGAATGTTCTTCCACGACTGCTTCGTTCGGGGATGTG 240
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 CAACACTTGGTGCTCCTTTGCTTAGAATGTTCTTCCACGACTGCTTCGTTCGGGGATGTG 279
Query 241 ACGGATCAATCTTGCTAGATAAACCGAACAATCAAGGTGAGAAGAGTGCGGTTCCTAACC 300
|||||||| | ||| |||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 280 ACGGATCAGTTTTGTTAGATAAACCAAACAATCAAGGTGAGAAGAGTGCAGTTCCTAACC 339
Query 301 TAAGCCTTCGAGGTTTTGGTATCATAGACGATTCCAAGGCGGCTCTAGAAAAAGTTTGTC 360
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 340 TAAGTCTTCGAGGGTTTGGCATCATAGACGATTCCAAGGCGGCTCTAGAAAAAGTGTGTC 399
Query 361 CGGGAATTGTTTCTTGCTCTGATGTCTTGGCACTTATCGCTAGAGACGCAATGGTTGCAC 420
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 400 CGGGAATTGTTTCTTGCTCTGATATCTTGGCACTTGTCGCTAGAGACGCAATGGTTGCAC 459
Query 421 TTGAAGGACCATCGTGGGAAGTTGAAACTGGAAGAAGAGACGGTAGGGTTTCTAATATCA 480
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 460 TTGAAGGACCATCATGGGAAGTTGAAACGGGAAGAAGAGACGGTAGGGTTTCTAACATCA 519
Query 481 ACGAAGTCAACTTGCCATCACCTTTTGATAACATCACCAAGCTTATCAACGATTTTCGCG 540
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 520 ACGAAGTCAACTTGCCATCACCTTTTGATAACATCACCAAGCTTATCAGCGATTTTCGCT 579
Query 541 CAAAGGGCCTCAACGAGAAGGATCTAGTCGTTCTCTCAGGTGGGCACACTATTGGAATGG 600
||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||
Sbjct 580 CAAAGGGCCTCAACGAGAAGGATCTAGTCATTCTCTCGGGTGGTCACACAATTGGAATGG 639
Query 601 GACATTGTCCTCTATTGACAAACCGGCTTTACAATTTCACCGGAAAAGGAGACAGCGACC 660
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 640 GACATTGTCCTTTATTGACAAACCGGCTTTACAACTTCACCGGAAAAGGAGACAGCGACC 699
Query 661 CGAGTTTGGACACAGAGTACGCTGCTAAGCTCAGGCAGAAATGCAAGCCCACCGATACCA 720
| ||||||||| | |||||||| |||||||||||| |||||||||||||||||||||| |
Sbjct 700 CAAGTTTGGACTCGGAGTACGCCGCTAAGCTCAGGAAGAAATGCAAGCCCACCGATACGA 759
Query 721 CGACGGCTCTAGAGATGGATCCGGGGAGTTTCAAAACATTCGACGTGAGCTACTTCACGC 780
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 760 CGACGGCTCTAGAGATGGATCCGGGGAGTTTCAAAACATTTGACTTGAGCTACTTCACGC 819
Query 781 TAGTGGCTAAGAGAAGAGGACTTTTCCAGTCGGATGCTGCTCTATTGGACAACTCCAAGA 840
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 820 TAGTGGCTAAGAGAAGAGGACTTTTCCAGTCGGATGCTGCTCTACTCGACAACTCCAAGA 879
Query 841 CTAGGGCTTATGTCTTGCAACAGGCAAGAACTCATGGGTCAATGTTCTTTAGTGACTTTG 900
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 880 CTAGGGCTTATGTCTTGCAACAGATAAGAACTCATGGGTCAATGTTCTTTAACGACTTTG 939
Query 901 GTGTCTCAATGGTGAAAATGGGTCGGA-TCGGAGTTCTTACGGGTCAGGCCGGGGAGATC 959
||||||| ||||||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 940 GTGTCTCTATGGTGAAAATGGGTCGGACT-GGAGTTCTTACGGGTAAGGCCGGGGAGATC 998
Query 960 CGTAAGACGTGTCGGTCTGCTAATTAAGAGATATAAAAATGAAAATATCT 1009
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 999 CGTAAGACGTGTCGGTCTGCTAATTAAGAGATATAGAAATGAAAATATCT 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49430400648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5