BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927656

Length=493
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G01185.1 | Symbols:  | Protein of unknown function (DUF784) ...   579    1e-164


> AT3G01185.1 | Symbols:  | Protein of unknown function (DUF784) 
| chr3:66151-66980 FORWARD LENGTH=830
Length=830

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 419/469 (89%), Gaps = 11/469 (2%)
 Strand=Plus/Plus

Query  14   aaaaaTAATGAA-AACTAATAATTGTGTTTACATGGCATTTCTTCTAATCACCACGTTGG  72
            ||||| |||||| ||  ||||||   ||||||||||| ||| ||||||||||||||||||
Sbjct  315  AAAAA-AATGAAGAA-AAATAATCACGTTTACATGGCTTTTGTTCTAATCACCACGTTGG  372

Query  73   TATTGTTTGCTTGTCCAAGTTTGGCTTTTGAAGGTAATGAGAAACCGTTGATAGATCCCA  132
            || ||||||||| ||||||||||||      || | ||||||||||||||||||||||||
Sbjct  373  TACTGTTTGCTTATCCAAGTTTGGC------AGATGATGAGAAACCGTTGATAGATCCCA  426

Query  133  ATATTGATTTAGACTCGACTTTTGCAAGATCTCCGAGTACGAGTGAATACGATAGAGACG  192
            ||||||||||||| || || |||||||||||||||||||||||||||||| ||| |||| 
Sbjct  427  ATATTGATTTAGATTCCACGTTTGCAAGATCTCCGAGTACGAGTGAATACAATATAGACA  486

Query  193  TGCTTAATAAACAGTCAAAAGAACTTGTTGAGTATGCAGGGACTTGCGGTGAAATGATGG  252
            |||||||||||||||||| |||||||||| ||| ||| |||||||||| ||   ||||||
Sbjct  487  TGCTTAATAAACAGTCAACAGAACTTGTTCAGTTTGCCGGGACTTGCGCTGGCTTGATGG  546

Query  253  GAGGA-ATTAAATGTAACGATGAAGTGATGTCTGAGATTCTTCAGAATAAACCAACTTCG  311
            | ||| |  ||||||| |||| |||| ||||||||||||||||| || | ||||||||||
Sbjct  547  GGGGAGA-AAAATGTAGCGATCAAGTCATGTCTGAGATTCTTCAAAACATACCAACTTCG  605

Query  312  AGGTATTGTTGTATGAAAATGATGATATATGGCCAAGAATGTCACATGGTGCTGAGGAAT  371
            |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  606  AGGTATTGTTGTCTGAAAATGATCATATATGGCCAAGAATGTCACATGGTGCTGAGGAAT  665

Query  372  CTATTCTTTGAGACTTATTATTACAAACCATTTGCTTCTAAAGGTCGTCCCAGGATTCCT  431
            || || ||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct  666  CTTTTGTTTCAGACTTATTATTACAAACCATTTGCCTCTAAAGGTCGTCCCAGGATTCTT  725

Query  432  AAAGTTTGGAACAGATGTTCTGCTGAAGTTGGTGGTTTTTAACCATTTT  480
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  726  AAAGTTTGGAACAGATGTTCTGCTGAAGTTGGTGGTTTTTAACCATTTT  774



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23509580796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5