BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927659 Length=734 Score E Sequences producing significant alignments: (Bits) Value AT3G01170.1 | Symbols: | Ribosomal protein L34e superfamily pr... 821 0.0 > AT3G01170.1 | Symbols: | Ribosomal protein L34e superfamily protein | chr3:57641-58909 FORWARD LENGTH=1269 Length=1269 Score = 821 bits (444), Expect = 0.0 Identities = 629/710 (89%), Gaps = 45/710 (6%) Strand=Plus/Plus Query 10 TTTGTGAGTGAGATGGTATATTTGCATAGCTCAATCTCGGTCTGCAATTCCGTCGACCAA 69 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 391 TTTGTGAGTGAGATGGTATATTTGCATAGCTCAATCTCGGTCTGCAATTCCGTCG----A 446 Query 70 GCTCCAACTTTGATCATGTCCAACTCTGTTCACTCCTCAGATTTGCATCCAAAATCGAGA 129 | |||| |||||||| || ||||| | | | || || ||||| ||| Sbjct 447 -C-CCAA---TGATCATG------TC---TCACT-C-C-----T-CA-CCTAAATCCAGA 483 Query 130 CACACCCGTAAGAAATCTTCTTACACATCATCACCAATAACCTGTTCCAAATTCCCTGTC 189 |||||||||| ||| |||| |||||||||| |||||||||||||||||||||| Sbjct 484 AACACCCGTAATAAA---TCTT---CATCATCACC---AACCTGTTCCAAATTCCCTGTC 534 Query 190 TGCGATGGGTCTCAATCGGCTGCTATCGACGTCGTCATCCTTATCGCCGTGATCACCGCC 249 ||||| || ||||| || ||||||||||||||||| ||||||||||| || ||||||||| Sbjct 535 TGCGACGGATCTCAGTCCGCTGCTATCGACGTCGTGATCCTTATCGCGGTCATCACCGCC 594 Query 250 TGCGGGTTCTTGTTCTTCCCTTACGTCAAACTCATCACCCTCAAATCGATTGAGGTCTTC 309 ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 TGCGGCTTCCTCTTCTTCCCTTACGTCAAACTCATCACCCTCAAATCGATTGAGGTCTTT 654 Query 310 TCGGATCTCTCGGTTTTAGTCAAAGAAGAGATTTTGCAGAACCCGATTGTGTATGGATCA 369 || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 655 TCAGATCTCTCTCTTTTAGTCAAACAAGAGATTTTGCAGAACCCGATTGTGTATGGATCA 714 Query 370 TTAGCTTTGAGTATCTTCTGCGCTGCGATCTCCACTTGGCTTGTTATACTCTTGTGTACT 429 |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| Sbjct 715 TTAGCTTTGAGTATCTTCTGTGCTGCCATCTCTACTTGGCTTGTTATACTCTTGTGTACT 774 Query 430 ATGCAGAGATGCGGGAAACCGAATTGCAAAGGGCTTAGGAAAGCTGTTGAGTTTGATATT 489 |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 775 ATGCAGAGATGCGGCAAACCGAATTGTAAAGGCCTTAGGAAAGCTGTTGAGTTTGATATT 834 Query 490 CAGCTTGAGACAGAGGAATGCGTGAAGAGCTCGAATAACAATAGCAACAAGAGGGGAATG 549 ||||||||||| ||||||||||| |||||||| || ||||||||||||||||| Sbjct 835 CAGCTTGAGACTGAGGAATGCGTCAAGAGCTC------CA---GCAACAAGAGGGGAATG 885 Query 550 TTTGAGTTGCCTCGTGTTCATCACCGTGAATTGGAAGCCGAGCTGAAGAAGATGGCACCG 609 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 886 TTTGAGTTGCCTCGTGTTCATCACCGTGAATTGGAAGCTGAGCTGAAGAAGATGGCTCCG 945 Query 610 CCTAATGGGCGAGCCGTTCTGGTTTTCAGAGCGAGATGTGGTTGTTCTATAAGGAGATTA 669 ||||||||||||||||| || |||||||||||||| |||||||||||| ||||||||||| Sbjct 946 CCTAATGGGCGAGCCGTGCTTGTTTTCAGAGCGAGGTGTGGTTGTTCTGTAAGGAGATTA 1005 Query 670 GTGGTTTCAGGGCCAAAGAAGCAGCAGAGGAAGATCAAGAAATGAAAAAG 719 || ||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 1006 GTCGTTTCCGGGCCAAAGAAGCAGCAGAGGAAGATCAAGAAATGAATAAG 1055 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35616010223 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5