BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927659
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01170.1 | Symbols: | Ribosomal protein L34e superfamily pr... 821 0.0
> AT3G01170.1 | Symbols: | Ribosomal protein L34e superfamily
protein | chr3:57641-58909 FORWARD LENGTH=1269
Length=1269
Score = 821 bits (444), Expect = 0.0
Identities = 629/710 (89%), Gaps = 45/710 (6%)
Strand=Plus/Plus
Query 10 TTTGTGAGTGAGATGGTATATTTGCATAGCTCAATCTCGGTCTGCAATTCCGTCGACCAA 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 391 TTTGTGAGTGAGATGGTATATTTGCATAGCTCAATCTCGGTCTGCAATTCCGTCG----A 446
Query 70 GCTCCAACTTTGATCATGTCCAACTCTGTTCACTCCTCAGATTTGCATCCAAAATCGAGA 129
| |||| |||||||| || ||||| | | | || || ||||| |||
Sbjct 447 -C-CCAA---TGATCATG------TC---TCACT-C-C-----T-CA-CCTAAATCCAGA 483
Query 130 CACACCCGTAAGAAATCTTCTTACACATCATCACCAATAACCTGTTCCAAATTCCCTGTC 189
|||||||||| ||| |||| |||||||||| ||||||||||||||||||||||
Sbjct 484 AACACCCGTAATAAA---TCTT---CATCATCACC---AACCTGTTCCAAATTCCCTGTC 534
Query 190 TGCGATGGGTCTCAATCGGCTGCTATCGACGTCGTCATCCTTATCGCCGTGATCACCGCC 249
||||| || ||||| || ||||||||||||||||| ||||||||||| || |||||||||
Sbjct 535 TGCGACGGATCTCAGTCCGCTGCTATCGACGTCGTGATCCTTATCGCGGTCATCACCGCC 594
Query 250 TGCGGGTTCTTGTTCTTCCCTTACGTCAAACTCATCACCCTCAAATCGATTGAGGTCTTC 309
||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TGCGGCTTCCTCTTCTTCCCTTACGTCAAACTCATCACCCTCAAATCGATTGAGGTCTTT 654
Query 310 TCGGATCTCTCGGTTTTAGTCAAAGAAGAGATTTTGCAGAACCCGATTGTGTATGGATCA 369
|| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 655 TCAGATCTCTCTCTTTTAGTCAAACAAGAGATTTTGCAGAACCCGATTGTGTATGGATCA 714
Query 370 TTAGCTTTGAGTATCTTCTGCGCTGCGATCTCCACTTGGCTTGTTATACTCTTGTGTACT 429
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 715 TTAGCTTTGAGTATCTTCTGTGCTGCCATCTCTACTTGGCTTGTTATACTCTTGTGTACT 774
Query 430 ATGCAGAGATGCGGGAAACCGAATTGCAAAGGGCTTAGGAAAGCTGTTGAGTTTGATATT 489
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 775 ATGCAGAGATGCGGCAAACCGAATTGTAAAGGCCTTAGGAAAGCTGTTGAGTTTGATATT 834
Query 490 CAGCTTGAGACAGAGGAATGCGTGAAGAGCTCGAATAACAATAGCAACAAGAGGGGAATG 549
||||||||||| ||||||||||| |||||||| || |||||||||||||||||
Sbjct 835 CAGCTTGAGACTGAGGAATGCGTCAAGAGCTC------CA---GCAACAAGAGGGGAATG 885
Query 550 TTTGAGTTGCCTCGTGTTCATCACCGTGAATTGGAAGCCGAGCTGAAGAAGATGGCACCG 609
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 886 TTTGAGTTGCCTCGTGTTCATCACCGTGAATTGGAAGCTGAGCTGAAGAAGATGGCTCCG 945
Query 610 CCTAATGGGCGAGCCGTTCTGGTTTTCAGAGCGAGATGTGGTTGTTCTATAAGGAGATTA 669
||||||||||||||||| || |||||||||||||| |||||||||||| |||||||||||
Sbjct 946 CCTAATGGGCGAGCCGTGCTTGTTTTCAGAGCGAGGTGTGGTTGTTCTGTAAGGAGATTA 1005
Query 670 GTGGTTTCAGGGCCAAAGAAGCAGCAGAGGAAGATCAAGAAATGAAAAAG 719
|| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1006 GTCGTTTCCGGGCCAAAGAAGCAGCAGAGGAAGATCAAGAAATGAATAAG 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35616010223
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5