BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927661 Length=1238 Score E Sequences producing significant alignments: (Bits) Value AT3G01150.1 | Symbols: PTB, ATPTB1, PTB1 | polypyrimidine tract... 1962 0.0 > AT3G01150.1 | Symbols: PTB, ATPTB1, PTB1 | polypyrimidine tract-binding protein 1 | chr3:51583-54506 FORWARD LENGTH=1511 Length=1511 Score = 1962 bits (1062), Expect = 0.0 Identities = 1159/1205 (96%), Gaps = 9/1205 (1%) Strand=Plus/Plus Query 21 GATGTCGAGCTCAGGCCAAACGCAGTTCCGTTATACGCAGACGCCGTCGAAGGTGGTGCA 80 ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || Sbjct 149 GATGTCGAGCTCAGGCCAAACTCAGTTCCGTTATACACAGACGCCGTCGAAGGTGGTTCA 208 Query 81 TCTGCGGAATCTTCCCTGGGAATGCGTCGAAGAGGAGCTCATCGACCTTTGTAAACGATT 140 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 209 TCTGCGGAATCTTCCATGGGAATGCGTCGAAGAGGAGCTCATCGACCTTTGCAAACGATT 268 Query 141 CGGCAAGATCGTCAATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCCTTCGTCGA 200 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 269 CGGCAAGATCGTCAATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCTTTCGTCGA 328 Query 201 ATTTGCTGACTTGAATCAAGCTATATCAATGGTTTCGTATTATGCTTCATCTTCAGAGCC 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 329 ATTTGCTGACTTGAATCAAGCTATATCAATGGTTTCGTATTATGCTTCATCTTCAGAGCC 388 Query 261 CGCACAGATTCG-GGGCAAAACTGTCTATATTCAGTACTCTAATCGCCATGAAATTGTTA 319 |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 389 CGCACAGATTCGTGGG-AAAACTGTCTATATTCAGTACTCTAATCGCCATGAGATTGTTA 447 Query 320 ACAATCAGAGTCCTGGAGATGTCCCTGGAAATGTCCTCTTGGTTACCTTTGAAGGAGTGG 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 448 ACAATCAGAGTCCTGGAGATGTCCCTGGAAATGTCCTCTTGGTTACCTTTGAAGGAGTGG 507 Query 380 AATCTCATGAAGTCAGCATCGATGTTATCCATCTGGTATTTTCTGCTTTTGGATTTGTGC 439 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 508 AATCTCACGAAGTCAGCATCGATGTTATCCATCTGGTATTTTCTGCTTTTGGATTTGTGC 567 Query 440 ACAAAATTGCCACTTTTGAGAAAGCTGCTGGTTTCCAGGCACTAGTTCAATTTAGTGATG 499 | ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 568 ATAAAATTGCCACATTTGAGAAAGCTGCTGGTTTCCAGGCACTAGTTCAATTTACTGATG 627 Query 500 TGGAGACTGCATCTGCGGCAAGGAATGCGTTGGATGGCAGAAGTATACCCAGATATTTGC 559 ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||| Sbjct 628 TGGAGACTGCATCCGCGGCAAGGAGTGCGTTGGATGGCAGAAGTATACCCAGGTATCTGC 687 Query 560 -TTCCAGAACATGTTGGTTCGTGCAATTTGCGAATGTCTTATTCAGCTCATACTGATCTC 618 |||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 688 TTTCC-GCACATGTTGGTTCGTGCAGTTTGCGAATGTCTTATTCAGCTCATACTGATCTC 746 Query 619 AACATCAAGTTTCAGTCCCACCGGAGCAGAGATTACACAAATCCATACCTTCCAGTGAAT 678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 747 AACATCAAGTTTCAGTCCCACCGGAGCAGAGATTACACAAATCCATACCTTCCAGTGAAT 806 Query 679 CACACCGCAATGGACGGGTCTATGCAGCCTGCCTTAGGTGCTGACGGCAAGAAAGTTGAA 738 || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 807 CAGACCGCAATGGATGGGTCTATGCAGCCTGCTTTAGGTGCTGACGGCAAGAAAGTTGAA 866 Query 739 TCTCAGAGCAACGTCCTTCTCGGTTTGATTGAGAATATGCAGTATGCTGTCACTGTGGAT 798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 867 TCTCAGAGCAACGTCCTTCTCGGTTTGATTGAGAATATGCAGTATGCTGTCACTGTGGAT 926 Query 799 GTTCTTCAAACGGTGTTTTCTGCATATGGAACTGTCCAGAAGATTGCTATATTTGAGAAG 858 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 927 GTTCTTCACACGGTGTTTTCTGCATATGGAACTGTCCAGAAGATTGCTATATTTGAGAAG 986 Query 859 AATGGTTCAACGCAAGCATTAATTCAATACTCTGATATACCAACAGCAGCAATAGCCAAA 918 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 987 AATGGTTCAACGCAAGCATTAATTCAATACTCTGATATACCAACAGCAGCAATGGCCAAA 1046 Query 919 GAAGCACTGGAAGGACACTGCATTTATGACGGTGGCTACTGTAAGCTTCGACTATCATAC 978 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1047 GAAGCACTGGAAGGACACTGCATTTATGACGGTGGCTACTGTAAGCTTCGACTATCATAC 1106 Query 979 TCTCGTCATACTGATCTCAATGTTAAGGCGTTTAGCGACAAAAGCAGAGACTATACACTC 1038 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1107 TCTCGTCATACTGATCTGAATGTTAAGGCTTTTAGCGACAAAAGCAGAGACTATACACTT 1166 Query 1039 CCCGATCTAAGCCTACTTG---CACAGAAGGGTCCCG-GAGTGTCGGCTTCTGCTCCACC 1094 || |||||||||||||||| |||| || ||||||| | ||||||| |||||| ||||| Sbjct 1167 CCTGATCTAAGCCTACTTGTGGCACAAAAAGGTCCCGCG-GTGTCGGGTTCTGCACCACC 1225 Query 1095 AACAGGTTGGCAGAACCCGCAAGTGCAAACTCAATACTCAGGTTATGGTGGAAGCCCATA 1154 | ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| Sbjct 1226 AGCAGGTTGGCAGAACCCGCAAGCGCAAAGTCAATACTCAGGTTATGGCGGAAGCCCATA 1285 Query 1155 TATGTACCCATCATCTGATCCCAATGGGGCTTCACCCTCAGGTCATCCTCCTTACTATGG 1214 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1286 TATGTACCCATCATCTGATCCCAACGGGGCTTCACCCTCAGGTCAACCTCCTTACTATGG 1345 Query 1215 TTGAG 1219 |||| Sbjct 1346 ATGAG 1350 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60843060540 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5