BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927661
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01150.1 | Symbols: PTB, ATPTB1, PTB1 | polypyrimidine tract... 1962 0.0
> AT3G01150.1 | Symbols: PTB, ATPTB1, PTB1 | polypyrimidine tract-binding
protein 1 | chr3:51583-54506 FORWARD LENGTH=1511
Length=1511
Score = 1962 bits (1062), Expect = 0.0
Identities = 1159/1205 (96%), Gaps = 9/1205 (1%)
Strand=Plus/Plus
Query 21 GATGTCGAGCTCAGGCCAAACGCAGTTCCGTTATACGCAGACGCCGTCGAAGGTGGTGCA 80
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 149 GATGTCGAGCTCAGGCCAAACTCAGTTCCGTTATACACAGACGCCGTCGAAGGTGGTTCA 208
Query 81 TCTGCGGAATCTTCCCTGGGAATGCGTCGAAGAGGAGCTCATCGACCTTTGTAAACGATT 140
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 209 TCTGCGGAATCTTCCATGGGAATGCGTCGAAGAGGAGCTCATCGACCTTTGCAAACGATT 268
Query 141 CGGCAAGATCGTCAATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCCTTCGTCGA 200
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 269 CGGCAAGATCGTCAATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCTTTCGTCGA 328
Query 201 ATTTGCTGACTTGAATCAAGCTATATCAATGGTTTCGTATTATGCTTCATCTTCAGAGCC 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 ATTTGCTGACTTGAATCAAGCTATATCAATGGTTTCGTATTATGCTTCATCTTCAGAGCC 388
Query 261 CGCACAGATTCG-GGGCAAAACTGTCTATATTCAGTACTCTAATCGCCATGAAATTGTTA 319
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 389 CGCACAGATTCGTGGG-AAAACTGTCTATATTCAGTACTCTAATCGCCATGAGATTGTTA 447
Query 320 ACAATCAGAGTCCTGGAGATGTCCCTGGAAATGTCCTCTTGGTTACCTTTGAAGGAGTGG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 ACAATCAGAGTCCTGGAGATGTCCCTGGAAATGTCCTCTTGGTTACCTTTGAAGGAGTGG 507
Query 380 AATCTCATGAAGTCAGCATCGATGTTATCCATCTGGTATTTTCTGCTTTTGGATTTGTGC 439
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 AATCTCACGAAGTCAGCATCGATGTTATCCATCTGGTATTTTCTGCTTTTGGATTTGTGC 567
Query 440 ACAAAATTGCCACTTTTGAGAAAGCTGCTGGTTTCCAGGCACTAGTTCAATTTAGTGATG 499
| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 568 ATAAAATTGCCACATTTGAGAAAGCTGCTGGTTTCCAGGCACTAGTTCAATTTACTGATG 627
Query 500 TGGAGACTGCATCTGCGGCAAGGAATGCGTTGGATGGCAGAAGTATACCCAGATATTTGC 559
||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |||
Sbjct 628 TGGAGACTGCATCCGCGGCAAGGAGTGCGTTGGATGGCAGAAGTATACCCAGGTATCTGC 687
Query 560 -TTCCAGAACATGTTGGTTCGTGCAATTTGCGAATGTCTTATTCAGCTCATACTGATCTC 618
|||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 688 TTTCC-GCACATGTTGGTTCGTGCAGTTTGCGAATGTCTTATTCAGCTCATACTGATCTC 746
Query 619 AACATCAAGTTTCAGTCCCACCGGAGCAGAGATTACACAAATCCATACCTTCCAGTGAAT 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 AACATCAAGTTTCAGTCCCACCGGAGCAGAGATTACACAAATCCATACCTTCCAGTGAAT 806
Query 679 CACACCGCAATGGACGGGTCTATGCAGCCTGCCTTAGGTGCTGACGGCAAGAAAGTTGAA 738
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 807 CAGACCGCAATGGATGGGTCTATGCAGCCTGCTTTAGGTGCTGACGGCAAGAAAGTTGAA 866
Query 739 TCTCAGAGCAACGTCCTTCTCGGTTTGATTGAGAATATGCAGTATGCTGTCACTGTGGAT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 TCTCAGAGCAACGTCCTTCTCGGTTTGATTGAGAATATGCAGTATGCTGTCACTGTGGAT 926
Query 799 GTTCTTCAAACGGTGTTTTCTGCATATGGAACTGTCCAGAAGATTGCTATATTTGAGAAG 858
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 GTTCTTCACACGGTGTTTTCTGCATATGGAACTGTCCAGAAGATTGCTATATTTGAGAAG 986
Query 859 AATGGTTCAACGCAAGCATTAATTCAATACTCTGATATACCAACAGCAGCAATAGCCAAA 918
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 987 AATGGTTCAACGCAAGCATTAATTCAATACTCTGATATACCAACAGCAGCAATGGCCAAA 1046
Query 919 GAAGCACTGGAAGGACACTGCATTTATGACGGTGGCTACTGTAAGCTTCGACTATCATAC 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 GAAGCACTGGAAGGACACTGCATTTATGACGGTGGCTACTGTAAGCTTCGACTATCATAC 1106
Query 979 TCTCGTCATACTGATCTCAATGTTAAGGCGTTTAGCGACAAAAGCAGAGACTATACACTC 1038
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1107 TCTCGTCATACTGATCTGAATGTTAAGGCTTTTAGCGACAAAAGCAGAGACTATACACTT 1166
Query 1039 CCCGATCTAAGCCTACTTG---CACAGAAGGGTCCCG-GAGTGTCGGCTTCTGCTCCACC 1094
|| |||||||||||||||| |||| || ||||||| | ||||||| |||||| |||||
Sbjct 1167 CCTGATCTAAGCCTACTTGTGGCACAAAAAGGTCCCGCG-GTGTCGGGTTCTGCACCACC 1225
Query 1095 AACAGGTTGGCAGAACCCGCAAGTGCAAACTCAATACTCAGGTTATGGTGGAAGCCCATA 1154
| ||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 1226 AGCAGGTTGGCAGAACCCGCAAGCGCAAAGTCAATACTCAGGTTATGGCGGAAGCCCATA 1285
Query 1155 TATGTACCCATCATCTGATCCCAATGGGGCTTCACCCTCAGGTCATCCTCCTTACTATGG 1214
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1286 TATGTACCCATCATCTGATCCCAACGGGGCTTCACCCTCAGGTCAACCTCCTTACTATGG 1345
Query 1215 TTGAG 1219
||||
Sbjct 1346 ATGAG 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60843060540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5