BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927674

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G01050.1 | Symbols: MUB1 | membrane-anchored ubiquitin-fold ...   630    2e-180


> AT3G01050.1 | Symbols: MUB1 | membrane-anchored ubiquitin-fold 
protein 1 precursor | chr3:13230-14675 FORWARD LENGTH=579
Length=579

 Score =  630 bits (341),  Expect = 2e-180
 Identities = 363/374 (97%), Gaps = 0/374 (0%)
 Strand=Plus/Plus

Query  1    GTTGTTTGGTTCTTGGATAGATGGCAGAAGTCCATAATCAACTAGAGATCAAGTTTCGGT  60
            |||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  206  GTTGGTTGCTTCTTGGATAAATGGCAGAAGTCCATAATCAACTAGAGATCAAGTTTCGGT  265

Query  61   TAACCGATGGTTCGGATATCGGTCCTATAGCATTCCCTGATGCTACAACTGTTTCGGCTT  120
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  266  TAACCGATGGTTCGGATATCGGTCCTAAAGCATTCCCTGATGCTACAACTGTTTCGGCTT  325

Query  121  TGAAGGAAACTGTTATTTCTGAATGGCCAAGAGAGAAGGAGAATGGACCGAGAACAGTGA  180
            |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct  326  TGAAGGAAACTGTTATTTCTGAATGGCCAAGAGAGAAGGAGAATGGGCCGAAAACAGTGA  385

Query  181  AAGAGGTGAAGTTGATCAGCGCAGGGAAGGTATTGGAGAACAACAAGACGGTTAAAGACT  240
            |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct  386  AAGAGGTGAAGTTGATAAGCGCAGGGAAGGTATTGGAGAACAGCAAGACGGTTAAAGACT  445

Query  241  ACCGAAGTCCTGTCTCTAATCTTGCAGGCGCTGTCACCACAATGCACGTTATCATCCAAG  300
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  446  ACCGAAGTCCTGTCTCTAATCTCGCAGGCGCTGTCACCACAATGCACGTTATCATCCAAG  505

Query  301  CTCCGGTTGCGGAAAAAGAAAAGAAGCCAAAAGGTGACCCGAAGATGAACAAATGCGTCT  360
            |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  506  CTCCGGTTACGGAAAAAGAAAAGAAGCCTAAAGGTGACCCGAAGATGAACAAATGCGTCT  565

Query  361  GTTCAGTCATGTAA  374
            ||||||||||||||
Sbjct  566  GTTCAGTCATGTAA  579



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18749870377


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5