BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927678
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15490.1 | Symbols: | UDP-glucose 6-dehydrogenase family pr... 1622 0.0
AT3G29360.1 | Symbols: | UDP-glucose 6-dehydrogenase family pr... 1147 0.0
AT3G01010.1 | Symbols: | UDP-glucose/GDP-mannose dehydrogenase... 662 0.0
> AT5G15490.1 | Symbols: | UDP-glucose 6-dehydrogenase family
protein | chr5:5027639-5030194 REVERSE LENGTH=1781
Length=1781
Score = 1622 bits (878), Expect = 0.0
Identities = 1260/1448 (87%), Gaps = 12/1448 (1%)
Strand=Plus/Plus
Query 20 aaaaTGGTGAAGATCTGCTGCATTGGAGCTGGTTATGTTGGTGGTCCAACTATGGCTGTC 79
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 103 AAAATGGTGAAGATTTGCTGCATTGGAGCTGGATATGTTGGTGGTCCAACCATGGCTGTC 162
Query 80 ATTGCTTTGAAA-TGTCCATCTGTTGAAGTTGCTGTTGTTGATATCTCTGTTCCACGGAT 138
|||||| | ||| ||||||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 163 ATTGCTCT-AAAGTGTCCATCTGTTGAAGTAGCTGTTGTTGATATCTCTGTGCCAAGGAT 221
Query 139 CACTGCTTGGAACAGTGACCAGCTT-CCTATCTATGAGCCGGGCCTCGATGATGTTGTTA 197
|| ||| ||||||||||| ||| || || ||||||||||| || || |||||||| ||||
Sbjct 222 CAATGCCTGGAACAGTGATCAG-TTACCGATCTATGAGCCTGGTCTTGATGATGTCGTTA 280
Query 198 AGCAATGCCGTGGCAAGAACCTCTTCTTTAGTACTGATGTGGAGAAACACGTGAGAGAAG 257
|||| |||||||| ||||| |||||||| || || ||||| |||||||| |||||||| |
Sbjct 281 AGCAGTGCCGTGGAAAGAATCTCTTCTTCAGCACCGATGTTGAGAAACATGTGAGAGAGG 340
Query 258 CTGATATCGTCTTTGTCTCTGTGAATACCCCGACTAAGACTCGTGGTCTTGGAGCTGGTA 317
|||| || || ||||| ||||| || ||||| |||||||| ||||||||||||||||| |
Sbjct 341 CTGACATTGTTTTTGTGTCTGTCAACACCCCTACTAAGACCCGTGGTCTTGGAGCTGGCA 400
Query 318 AAGCTGCTGATTTGACTTACTGGGAAAGCGCAGCTCGGATGATTGCTGATGTTTCGGTTT 377
||||||| ||||||||||||||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 401 AAGCTGCGGATTTGACTTACTGGGAGAGCGCTGCTCGTATGATTGCCGATGTTTCGGTTT 460
Query 378 CTGACAAGATCGTTGTCGAGAAATCAACTGTCCCTGTCAAAACCGCTGAAGCTATTGAGA 437
| |||||||| ||||| |||||||||||||| |||||||||||||| || || |||||||
Sbjct 461 CCGACAAGATTGTTGTTGAGAAATCAACTGTTCCTGTCAAAACCGCAGAGGCAATTGAGA 520
Query 438 AGATTCTGATGCACAACAGTAAAGGAATCAAGTTCCAGATTCTTTCCAACCCTGAGTTCC 497
||||||| | |||||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct 521 AGATTCTTACACACAACAGCAAAGGAATCAAATTCCAGATTCTGTCAAACCCTGAGTTCC 580
Query 498 TTGCTGAAGGAACCGCTATTGAAGATCTTTTCTAT-CCTGACCGTGTTCTCATCGGTGGT 556
||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||
Sbjct 581 TTGCTGAAGGAACCGCTATTGAAGACCTTTTC-ATGCCTGACCGTGTCCTCATCGGTGGT 639
Query 557 CGTGAAACACCCGAAGGGTTTAAAGCTGTCAAAGCCTTAAAAGACGTTTATGCTCAGTGG 616
||||||||| | ||||| ||| ||| ||||||||||| |||||| ||||||| || |||
Sbjct 640 CGTGAAACAACTGAAGGCTTTGCAGCCGTCAAAGCCTTGAAAGACATTTATGCCCAATGG 699
Query 617 GTTCCAGAAGATAGAATCCTAACCACTAATCTCTGGTCCGCTGAGCTCACCAAGCTTGCT 676
|| || ||||| |||||||| ||||| ||||| ||||| || ||||| ||||||||||
Sbjct 700 GTCCCTGAAGAGAGAATCCTCACCACCAATCTATGGTCTGCCGAGCTTTCCAAGCTTGCA 759
Query 677 GCCAACGCATTCTTAGCCCAAAGAATCTCATCTGTCAATGCAATGTCTGCTCTCTGTGAA 736
|| || || ||| ||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 760 GCTAATGCCTTCCTAGCCCAGAGAATCTCATCAGTCAATGCAATGTCCGCTCTCTGTGAG 819
Query 737 GCCACTGGTGCGAATGTCTCTGAAGTCTCCTATGCTGTTGGTAAAGACTCTAGAATCGGT 796
|| ||||| || |||||||| || ||||| |||||||| || ||||||||| | || |||
Sbjct 820 GCAACTGGCGCCAATGTCTCAGAGGTCTCTTATGCTGTGGGCAAAGACTCTCGTATTGGT 879
Query 797 CCCAAGTTCTTGAATTCGAGTGTCGGCTTTGGTGGCTCCTGTTTCCAGAAAGATATCCTC 856
|||||||||||||| || ||||| || || || || || ||||||||||||||||| |||
Sbjct 880 CCCAAGTTCTTGAACTCTAGTGTTGGGTTCGGAGGATCTTGTTTCCAGAAAGATATTCTC 939
Query 857 AACTTAGTCTACATCTGTGAATGCAACGGCCT-CCCTGAAGTAGCGGAATACTGGAAACA 915
||||||||||||||||| |||||||||||| | ||| ||||| || || |||||||||||
Sbjct 940 AACTTAGTCTACATCTGCGAATGCAACGGCTTACCC-GAAGTTGCTGAGTACTGGAAACA 998
Query 916 AGTCATCAAGATCAATGACTACCAGAAAACCCGGTTTGTAAACCGCATTGTGTCCTCGAT 975
||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || || ||
Sbjct 999 AGTCATCAAGATCAACGACTACCAGAAAACCCGATTTGTTAACCGCATTGTCTCTTCAAT 1058
Query 976 GTTCAACACCGTTTCCAACAAAAAGATTGCCGTCCTCGGGTTCGCCTTCAAGAAAGATAC 1035
||| ||||| || ||||||||||||||||| || ||||| ||||| ||||||||||| ||
Sbjct 1059 GTTTAACACAGTCTCCAACAAAAAGATTGCGGTTCTCGGCTTCGCTTTCAAGAAAGACAC 1118
Query 1036 CGGAGACACGAGAGAGACTCCAGCCATTGATGTCTGCAAAGGTTTGTTAGGAGACAAAGC 1095
|||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 1119 TGGAGACACTAGAGAGACTCCAGCCATTGATGTCTGCAAAGGTCTGTTAGGTGACAAGGC 1178
Query 1096 CCGAATCAGCATCTATGATCCACAAGTCACTGAAGAACAGATCCAAAGAGACTTAACCAT 1155
|| |||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1179 TCGTCTCAGCATCTACGACCCACAAGTCACTGAAGAGCAGATCCAAAGAGACTTAACCAT 1238
Query 1156 GAACAAATTCGACTGGGACCATCCAATTCACCTTCAACCCATGAGTCCAACCACTGTGAA 1215
||||||||||||||||||||| ||| |||| || || |||||||| || |||||||||||
Sbjct 1239 GAACAAATTCGACTGGGACCACCCACTTCATCTCCAGCCCATGAGCCCCACCACTGTGAA 1298
Query 1216 ACAAGTCTCAGTCGTTTGGGACGCCTATGCTGCCACTAAAGATGCCCATGGAATCTGC-T 1274
||||||||||||| ||||||||| || |||| || ||||| ||||| || |||||| |
Sbjct 1299 GCAAGTCTCAGTCGCTTGGGACGCATACACTGCAACCAAAGACGCCCACGGTATCTGCAT 1358
Query 1275 TGTTAACGGAGTGGGACGAGTTTAAGTCGCTTGACTAT-GAGCGTATCTTTGAAAATATG 1333
| ||||| |||||||||||||| ||| ||||| | | |||| |||||||| ||||||
Sbjct 1359 T-TTAACCGAGTGGGACGAGTTCAAGAAACTTGA-TTTCCAGCGGATCTTTGAGAATATG 1416
Query 1334 CAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTGTTGATGCAGAGAAGCTGAGGAAG 1393
|||||||| || ||||| || || || ||||| || || || || || || || ||| ||
Sbjct 1417 CAGAAACCGGCTTTTGTTTTTGACGGTAGAAACGTGGTCGACGCTGATAAACTCAGGGAG 1476
Query 1394 ATAGGGTTTATTGTTTACTCTATTGGTAAGCCATTGGACCAGTGGCTCAAGGACATGCCT 1453
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1477 ATTGGGTTTATTGTTTACTCCATTGGTAAGCCATTGGACCAGTGGCTCAAGGACATGCCT 1536
Query 1454 GCTCTTGC 1461
||||||||
Sbjct 1537 GCTCTTGC 1544
> AT3G29360.1 | Symbols: | UDP-glucose 6-dehydrogenase family
protein | chr3:11267091-11269229 REVERSE LENGTH=1794
Length=1794
Score = 1147 bits (621), Expect = 0.0
Identities = 1191/1463 (81%), Gaps = 52/1463 (4%)
Strand=Plus/Plus
Query 19 aaaaaTGGTGAAGATCTGCTGCATTGGAGCTGGTTATGTTGGTGGTCCAACTATGGCTGT 78
||| ||||||||||| || || ||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 64 AAAGATGGTGAAGATATGTTGTATTGGAGCTGGGTATGTTGGTGGACCAACAATGGCAGT 123
Query 79 CATTGCTTTGAAATGTCCA-TCTGTTGAAGTTGCTGTTGTTGATATCTCTGTTCCACGGA 137
||||| |||||||||||| | |||||||| || ||||||||||||||||| ||||| |
Sbjct 124 GATTGCATTGAAATGTCCAGAC-GTTGAAGTAGCGGTTGTTGATATCTCTGTACCACGTA 182
Query 138 TC-ACTGCTTGGAACAGTGACCA-GCTTCCTATCTATGAGCCGGGCCTCGATGATGTTGT 195
|| || |||||||||||||| || |||||| || || ||||| || || |||||||||||
Sbjct 183 TCAAC-GCTTGGAACAGTGA-CACGCTTCCGATTTACGAGCCTGGTCTTGATGATGTTGT 240
Query 196 TAAGCAATGCCGTGGCAAGAACCTCTTCTTTAGTACTGATGTGGAGAAACACGTGAGAGA 255
||||||||||||||||||||||| ||||||||||||||||| |||||||| || || ||
Sbjct 241 GAAGCAATGCCGTGGCAAGAACCTTTTCTTTAGTACTGATGTTGAGAAACATGTTAGGGA 300
Query 256 AGCTGATATCGTCTTTGTCTCTGTGAATACCCCGACTAAGACTCGTGGTCTTGGAGCTGG 315
||||||||| || ||||| ||||| || || |||||||||||| | |||||||| |||||
Sbjct 301 AGCTGATATTGTGTTTGTTTCTGTCAACACACCGACTAAGACTAGAGGTCTTGGTGCTGG 360
Query 316 TAAAGCTGCTGAT-TTGACTTACTGGGAAAGCGCAGCTCGGATGATTGCTGATGTTTCGG 374
||||||||| ||| || || |||||||| ||||| || || ||||| |||||||||||||
Sbjct 361 TAAAGCTGCGGATCTT-ACGTACTGGGAGAGCGCTGCGCGTATGATCGCTGATGTTTCGG 419
Query 375 TTTCTGACAAGATCGTTGTCGAGAAATCAACTGTCCCTGTCAAAACCGCTGAAGCTATTG 434
| || || ||||| || || |||||||| ||||| || || ||||| |||||||||||||
Sbjct 420 TATCGGATAAGATTGTCGTTGAGAAATCGACTGTTCCGGTTAAAACAGCTGAAGCTATTG 479
Query 435 AGAAGATTCTGATGCACAACAGTAAAGGAATCAAGTTCCAGATTCTTTCCAA-CCCTGAG 493
|||||||| ||| || ||||||||||| || ||||| ||||||||||| || ||| |||
Sbjct 480 AGAAGATTTTGACACATAACAGTAAAGGGATTAAGTTTCAGATTCTTTCGAATCCC-GAG 538
Query 494 TTCCTT-GCTGAAGGAACCGCTATTGAA-GATCT-TTTCTATCCTGACCGTGTTCTCATC 550
|| || || ||||||||||| ||| || || || ||| |||| ||||||||||| |||
Sbjct 539 TT-TTTGGCGGAAGGAACCGCGATT-AAGGACCTATTT-AATCCGGACCGTGTTCTTATC 595
Query 551 GGTGGTCGTGAAACACCC-GAAGGGTTTAAAGCTGT-CAAAGC-CTTAAAAGACGTTTAT 607
|| || || ||||| ||| |||||||||||||| || || | | || || | | || |||
Sbjct 596 GGAGGGCGGGAAAC-CCCAGAAGGGTTTAAAGCGGTGCAGA-CTCTCAAGA-ATGTGTAT 652
Query 608 GCTCAGTGGGTTCCAGAA-GATAGAATCCTAACCACTAATCTCTGGTCCGCTGAGCTCAC 666
|| || |||||||| ||| | | |||| |||| || ||||||||||| |||||||| |
Sbjct 653 GCACACTGGGTTCCTGAAGGCCA-AATCATAACAACCAATCTCTGGTCTGCTGAGCTGTC 711
Query 667 CAAGCTTGCTGCCAACGCATTCTTAGCCCAAAGAATCTCATCTGTCAATGCAATGTCTGC 726
||||||||| || ||||| ||||| || ||||| || ||||| || ||||| ||||| ||
Sbjct 712 CAAGCTTGCGGCAAACGCTTTCTTGGCTCAAAGGATTTCATCAGTGAATGCTATGTCGGC 771
Query 727 TCTCTGTGAAGCCACTGGTGCGA-ATGTCTCTG-AAGTCTCCTATGCTGTTGGTAAAGAC 784
||| ||||||||||| || || | ||||| | | |||| || || || ||||||| ||||
Sbjct 772 TCTGTGTGAAGCCACAGGCGC-AGATGTCAC-GCAAGTGTCTTACGCGGTTGGTACAGAC 829
Query 785 TCTAGAATCGGTCCCAAGTTCTTGAATTCGAGTGTCGGCTTTGGTGGCTCCTGTTTCCAG 844
|| || || ||||||||||||||||| |||||||| || || ||||| || |||||||||
Sbjct 830 TCAAGGATTGGTCCCAAGTTCTTGAACTCGAGTGTTGGATTCGGTGGTTCGTGTTTCCAG 889
Query 845 AAAGATATCCTCAA-CTTAGTCTACATCTGTGAATGCAACGGCCTCCCTGAAGTAGCGGA 903
|| || || || || ||| |||||||||||||| |||||||| ||||| ||||| || ||
Sbjct 890 AAGGACATTCTGAATCTT-GTCTACATCTGTGAGTGCAACGGACTCCCGGAAGTGGCAGA 948
Query 904 ATACTGGAAACAAGTCATCAAGATCAATGACTACCAGAAAACCCGGTTTGTAAACCGCAT 963
|||||||| ||||||||||||||||||||||||||||| | |||||| || ||||| |
Sbjct 949 GTACTGGAAGCAAGTCATCAAGATCAATGACTACCAGAAGAGCCGGTTCGTGAACCGTGT 1008
Query 964 TGTGTCCTCGATGTTCAACACCGTTTCCAACAAAAAGATTGCCGTCCTCGGGTTCGCCTT 1023
||| ||||| ||||||||| | || || ||||| |||||||| || ||||| ||||| ||
Sbjct 1009 TGTTTCCTCCATGTTCAACTCTGTATCAAACAAGAAGATTGCGGTTCTCGGTTTCGCATT 1068
Query 1024 CAAGAAAGATACCGGAGACACGAGAGAGACTCCAGCCATTGATGTCTGCAAAGGT-TTGT 1082
||||||||| ||||| ||||| || |||||||||||||| ||||| ||||| ||| || |
Sbjct 1069 CAAGAAAGACACCGGTGACACAAGGGAGACTCCAGCCATCGATGTGTGCAAGGGTCTT-T 1127
Query 1083 TAGGAGACAAAGCCCGAATCAGCATCTATGATCCACAAGTCACTGAAGAACAGATCCAAA 1142
||| ||||||||| | | ||||| || || |||||||| ||||| || |||||||| |
Sbjct 1128 TAGAAGACAAAGCAAGGCTAAGCATTTACGACCCACAAGTGACTGAGGATCAGATCCAGA 1187
Query 1143 GAGACTTAACCATGAACAAATTCGACTGGGACCATCCAATTCACCTT-CAACCCATGAGT 1201
| || ||| |||||||||| ||||||||||||||||| | || || || || |||||
Sbjct 1188 GGGATTTATCCATGAACAAGTTCGACTGGGACCATCCTCTACAT-TTGCAGCCAATGAGC 1246
Query 1202 CCAACCACTGTGAAACAAGTCTCAGTCGTTTGGGACGCCTATGCTGCCACTAAAGATGCC 1261
||||| || ||||||||||| | || ||||||||| || | || ||||| || ||
Sbjct 1247 CCAACAACAGTGAAACAAGTGACCGTTACTTGGGACGCATACGAAGCAACTAAGGACGCT 1306
Query 1262 CATGGAATCTGCTTGTTAACGGAGTGGGACGAGTTTAAGT-CGCTTGACTATG-AGC-GT 1318
|| || |||||| | | || |||||||| ||||| ||| | ||||| | | || |
Sbjct 1307 CACGGTATCTGCATCATGACCGAGTGGGATGAGTTCAAGAAC-CTTGATT-TCCAGAAG- 1363
Query 1319 ATCTTTGAAAATATGCAGAAACCAGCGTTT-GTCTTCGATGGCAGAAATGTTGTTGA-T- 1375
|||||||| || |||||||||||||| ||| || |||||||| ||||| || | || |
Sbjct 1364 ATCTTTGACAACATGCAGAAACCAGC-TTTCGTGTTCGATGGAAGAAACATTAT-GAATC 1421
Query 1376 -GCAGAGAAGCTGAGGAAGATAGGGTTT-ATTGTTTACTCTATTGGTAAGCCAT-TGGAC 1432
||| | ||||| ||| |||| || ||| ||||||||||| ||||||||||| | | |||
Sbjct 1422 TGCA-A-AAGCTAAGGGAGATTGG-TTTCATTGTTTACTCCATTGGTAAGCC-TCTCGAC 1477
Query 1433 CAGTGGCTCAAGGACATGCCTGC 1455
| ||||||||||||||||||||
Sbjct 1478 GACTGGCTCAAGGACATGCCTGC 1500
> AT3G01010.1 | Symbols: | UDP-glucose/GDP-mannose dehydrogenase
family protein | chr3:4342-4818 FORWARD LENGTH=477
Length=477
Score = 662 bits (358), Expect = 0.0
Identities = 450/492 (91%), Gaps = 15/492 (3%)
Strand=Plus/Plus
Query 974 ATGTTCAACACCGTTTCCAACAAAAAGATTGCCGTCCTCGGGTTCGCCTTCAAGAAAGAT 1033
|||||||| || ||||||||||||||||||| ||||||| |||||||||| ||||
Sbjct 1 ATGTTCAATACTGTTTCCAACAAAAAGATTGTTGTCCTCGAGTTCGCCTTC----AAGA- 55
Query 1034 ACCGGAGACACGAGAGAGACTCCAGCCATTGATGTCTGCAAAGGTTTGTTAGGAGACAAA 1093
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 56 A----AGACACGAGAGAGACTCCAGCCATTGACGTCTGCAAAGGTTTGTTAGGAGACAAG 111
Query 1094 GCCCGAATCAGCATCTATGATCCACAAGTCACTGAAGAACAGATCCAAAGAGACTTAACC 1153
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 112 GCCCGAATCAGCATCTATGATCCACAAGTCACGGAAGAACAAATCCAAAGAGACTTAACC 171
Query 1154 ATGAACAAATTCGACTGGGACCATCCAATTCACCTTCAACCCATGAGTCCAACCACTGTG 1213
||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 172 ATGAACACATTCGACTGGGACCATCCACTTCACCTCCAACCCATGAGTCCAACCACTGTG 231
Query 1214 AAACAAGTCTCAGTCGTTTGGGACGCCTATGCTGCCACTAAAGATGCCCATGGAATCTGC 1273
|||||||||||||| | ||||||||| || |||||||| ||||| ||||| |||||||||
Sbjct 232 AAACAAGTCTCAGTTGCTTGGGACGCTTACGCTGCCACCAAAGACGCCCACGGAATCTGC 291
Query 1274 TTGTTAACGGAGTGGGACGAGTTTAAGTCGCTTGACTATGAGCGTATCTTTGAAAATATG 1333
|||||||| ||||||||||||| |||| |||||||||||||||| || |||||||| |||
Sbjct 292 TTGTTAACCGAGTGGGACGAGTATAAGACGCTTGACTATGAGCGGATTTTTGAAAACATG 351
Query 1334 CAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTGTTGATGCAGAGAAGCTGAGGAAG 1393
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 352 CAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTTTTGATGCAGAGAAGCTGAGGAAG 411
Query 1394 ATAGGGTTTATTGTTTACTCTATTGGTAAGCCATTGGACCAGTGGCTCAAGGACATGCCT 1453
|||||||||||||||||||||||||||||||| ||||||||||||| | |||||||
Sbjct 412 ATAGGGTTTATTGTTTACTCTATTGGTAAGCCGTTGGACCAGTGGC--A----CATGCCT 465
Query 1454 GCTCTTGCTTAG 1465
||||||||||||
Sbjct 466 GCTCTTGCTTAG 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73292795700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5