BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927697
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02200.2 | Symbols: | Proteasome component (PCI) domain pro... 2034 0.0
AT5G15610.1 | Symbols: | Proteasome component (PCI) domain pro... 1046 0.0
> AT3G02200.2 | Symbols: | Proteasome component (PCI) domain protein
| chr3:406594-409163 FORWARD LENGTH=1596
Length=1596
Score = 2034 bits (1101), Expect = 0.0
Identities = 1233/1298 (95%), Gaps = 4/1298 (0%)
Strand=Plus/Plus
Query 1 TTCGAAACCGGAGCTAAGCTATGACGACGATCGTTCCCACTTCCGAAGAAGATCCCTTTC 60
||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||
Sbjct 79 TTCGAAACCGGAGCTAAGCTATGACGACGATTGTTCCCACCTCCGAAGAAAATCCCTTTC 138
Query 61 TCGCTGTTGTCCGATTCACTTCCCAGCTCGCCTGGGCCGATGCTGGTCCCGAGGCTGCAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 139 TCGCTGTTGTCCGATTCACTTCCCAGCTCGCCTGGGCCGATGCTGGTCCCGAGGCAGCAG 198
Query 121 AGCCAGAAATTACCAGGCTATGTAGGGAGGCTGAGGAGTCAATAGG-AAAAGAGAAGTGG 179
||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||||
Sbjct 199 AGCCAGAAATTACCAGGCTCTGTAGGGAGGCTGAGGAGTCAAT-GGTAGCAGAGAAGTGG 257
Query 180 CTGGAATTGTCTACGTTGATGGTAACTTCAGCTGAATTGGTATCATCCAAGATACCTGAG 239
|| ||||||||| |||| ||||| |||||||||||||||||||| || |||||| |||||
Sbjct 258 CTTGAATTGTCTTCGTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAG 317
Query 240 AAAGATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAAAGTTG-AAAGCCC 298
||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 318 AAAGATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATG-CGAAAAGCCC 376
Query 299 TGAGGAAGTCCTTGAAATTGTGAAAGCTATAGCTTCCAAGGTTGCTCAACAACCGAGTGA 358
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 377 TGAGCAAGTCCTTGAAATGGTGAAAGCTATAGCTTCCAAGGTTGCTCAACAACCCAGTGA 436
Query 359 CAAAGCTTCACTTCGTTTGAAGATCCTCTTTAATCTCTATAACCTGGTGGACCATCCGTA 418
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 437 CAAAGCTTCACTTCGTTTGAAGATCCTCTTCAATCTCTATAACCTGGTTGACCACCCGTA 496
Query 419 TGCTCGTTTTCAAGTATACATGAAAGCTCTTACACTAGCTGTCGATGGGAAGGTTACTGA 478
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 497 TGCTCGATTTCAAGTATACATGAAAGCTCTTACACTAGCTGTTGATGGGAAGGTTACTGA 556
Query 479 GTACATAGTTTCTTCTTTTAAGAAGGTCGATAACTTCCTTAAAGAGTGGAATATTGACAT 538
||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||
Sbjct 557 GTACATAGTTTCTTCTTTTAAGAAGATCGATAACTTTCTGAAAGAGTGGAATATTGACAT 616
Query 539 TAAGGATCAGAGGGAACTCTTTCTTGCCATTGCCAATGTGCTGAAAGAAAACAAAAGCTT 598
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 617 TAAAGATCAGAGGGAACTCTTTCTTGCCATTGCTAATGTGCTGAAAGAAAACAAAAGCTT 676
Query 599 GGTGAATGAATCCCTTAAGTTCTTGACGAAGTACCTAGCAACTTTCTCCAATGAGGATAC 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 677 GGTGAATGAATCCCTTAAGTTCTTGACGAAGTACCTAGCAACTTTCTCCAATGAGGATGC 736
Query 659 TCAGGTCCTGGATGAAGCCAAGGAGGAGGCTGTGCGTGCAGTTATCGAATTTGTCAAAGC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 TCAGGTCCTGGATGAAGCCAAGGAGGAGGCTGTGCGTGCAGTTATCGAATTTGTCAAAGC 796
Query 719 TTCCACTATTTTTCAGTGTGATTTATTGGACTTGCCAGCCGTAGCACAATTGGAAAAGGA 778
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TTCCAGTATTTTCCAGTGTGATTTATTGGACTTGCCAGCCGTAGCACAATTGGAAAAGGA 856
Query 779 TGCTAAATATGCTCCGGTTTACCAGCTTCTGAAGATCTTTCTTACTCAGAGACTAAATGC 838
|||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 857 TGCTAAATATGCACCTGTTTACCAACTTCTGAAGATTTTTCTTACTCAGAGGTTAAATGC 916
Query 839 CTACACGGAATTCCAAAATGCAAATCCGGAATTTCTGCAAAGCTATGGACTTGCTGATGA 898
||||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||
Sbjct 917 CTACACGGAATTCCAAAATGCAAATTCGGGATTTCTGCAAAGCTATGGACTTTCCAATGA 976
Query 899 AGATTGTGTTTCGAAGATGAGATTGTTGTCACTAGTGGACTTGGCCTCAGATGAATCTGG 958
|||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 977 AGATTGTGTTACGAAGATGAGGTTGTTGTCACTAGTGGATTTGGCCTCAGATGAATCTGG 1036
Query 959 CAAAATACCTTACGCCTCAATTAAAGACGCTCTTCAGGTAAATGAAGAAGATGTTGAGTT 1018
||||||||||||| |||| ||||||||| ||||||||||||||||| | ||||| |||||
Sbjct 1037 CAAAATACCTTACACCTCGATTAAAGACACTCTTCAGGTAAATGAACAGGATGTCGAGTT 1096
Query 1019 ATGGATCGTGAAGGCAATAACTGCAAAATTGATTGATTGTAAGATGGATCAGATGAACCA 1078
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1097 ATGGATCGTGAAGGCAATAACTGCAAAACTGATTGAGTGTAAGATGGATCAGATGAACCA 1156
Query 1079 AGTTGTAATTGTCAGCCGCTCTTCCGAACGTGAATTTGGGACAAAGCAATGGCAATCTCT 1138
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 AGTTTTAATTGTCAGCCGCTCTTCCGAACGTGAATTTGGGACAAAGCAATGGCAATCTCT 1216
Query 1139 CCGAACAAAGCTTGCGACTTGGAAGGACAACATTTCAAACATCATAACTACAATCGAATC 1198
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1217 CCGAACAAAGCTTGCGACTTGGAAGGACAACATTTCAAGTATCATAACTACCATCGAATC 1276
Query 1199 AAATAAGGTAACCGAGGAAGGTTCTCAGGCATCATCATCATCTGCTGCAGCAATTCAAGG 1258
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1277 GAATAAGGTAACGGAGGAAGGTTCTCAGGCATCATCATCATCTGCTGCAGCTATTCAAGG 1336
Query 1259 CTTGAGTGTTCGTTGAAAAAGCTATCAAGAAAAACCGT 1296
||||||||||||||||||||||||||||||||||||||
Sbjct 1337 CTTGAGTGTTCGTTGAAAAAGCTATCAAGAAAAACCGT 1374
> AT5G15610.1 | Symbols: | Proteasome component (PCI) domain protein
| chr5:5079513-5082205 FORWARD LENGTH=1671
Length=1671
Score = 1046 bits (566), Expect = 0.0
Identities = 919/1088 (84%), Gaps = 30/1088 (3%)
Strand=Plus/Plus
Query 21 ATGACGACGATCGTTCCCACTTCCGAAGAAGATCCCTT-TCTCGCTGTTGTCCGATTCAC 79
||||||||||| |||||||| |||||||||||| |||| ||||| |||| || |||||
Sbjct 67 ATGACGACGATTGTTCCCACCTCCGAAGAAGAT-CCTTACCTCGCCATTGTTCGTTTCAC 125
Query 80 TTCCCAGCTCGCCTGGGCCGATGCTGGTCCCGAGGCT-GCAGAGCCAGAAATTACCAGGC 138
||||||||| |||||||| |||||||||||||||| | |||||||| ||| || ||||||
Sbjct 126 TTCCCAGCTTGCCTGGGCTGATGCTGGTCCCGAGG-TCGCAGAGCCTGAAGTTTCCAGGC 184
Query 139 TATGTAGGGAGGCTGAGGAGTCAATAGGAAAAGAGAAGTGGCTGGAATTGTCTACGTTGA 198
|||||| ||| || |||||||| ||| ||| | |||||||||||| ||| | |||||||
Sbjct 185 TATGTAAGGAAGCAGAGGAGTCTATAATAAATGGGAAGTGGCTGGATTTGGCAACGTTGA 244
Query 199 TGGTAACTTCAGCTGAATTGGTATCATCCAAGATAC-CTGAGAAAGATCTTGAGTGTACC 257
|||||||||||||||| ||||||||| |||| || | |||||||||||||||||||||||
Sbjct 245 TGGTAACTTCAGCTGACTTGGTATCAGCCAAAAT-CTCTGAGAAAGATCTTGAGTGTACC 303
Query 258 TACACCATCATTTGCAGCATTGTCAAGAAAGTTGAA-AGCCCTGAGGAAGTCCTTGAAAT 316
|||||||||||||||| | |||||||||| | ||| || ||||||||||||||||||||
Sbjct 304 TACACCATCATTTGCAACCTTGTCAAGAATGC-GAACAGTCCTGAGGAAGTCCTTGAAAT 362
Query 317 TGTGAAAGCTATAGCTTCCAAGGTTGCTCAACAACCGAGTGACAAAGCTTCACTT-CGTT 375
||||||||||||||| | |||||| ||||||||| | |||||||||||| || ||||
Sbjct 363 GGTGAAAGCTATAGCTGCTAAGGTTATTCAACAACCAAACGACAAAGCTTCA-TTGCGTT 421
Query 376 TGAAGATCCTCTTTAATCTCTATAACCTGGTGGACCATCCGTATGCTCGTTTTCAAGTAT 435
||||||||||||| ||||| ||||| ||||| ||||| || ||||||||||||||||||
Sbjct 422 TGAAGATCCTCTTCAATCTATATAATCTGGTAGACCACCCAAATGCTCGTTTTCAAGTAT 481
Query 436 ACATGAAAGCTCTT-ACACTAGCTGTCGATGGGAAGGTTACTGAGTACATAGTTTCTTCT 494
||||||||||||| | ||| ||||| | ||||||||||| ||||| || || ||||
Sbjct 482 ACATGAAAGCTCTGGA-ACTGGCTGTAAACGGGAAGGTTACCGAGTATATTGTACCTTCC 540
Query 495 TTTAAGAAGGTCGATAACTTCCTT-AAAGAGTGGAATATTGACATTAAGGATCAGAGGGA 553
||||||||| | || | |||| || ||||||||||| |||||||| || |||||| ||||
Sbjct 541 TTTAAGAAGATTGACAGCTTC-TTGAAAGAGTGGAACATTGACATCAAAGATCAGCGGGA 599
Query 554 ACTCTTTCTTGCCATTGCCAATGTGCTGAAAGAAAACAAAAGCTTGGTGAATGAATCCCT 613
||| |||||||| ||||| || ||||| | |||||| ||||| || | ||| ||||||||
Sbjct 600 ACTATTTCTTGCTATTGCTAAAGTGCTTAGAGAAAATAAAAGTTTTGCGAAAGAATCCCT 659
Query 614 TAAGTTCT-TGACGAAGTACCTAGCAACTTTCTCCAATGAGGATACTCAGGTCCTG-GAT 671
|||| | |||| || || | ||||||||||||||||| ||||| || |||||| | |
Sbjct 660 CCAGTT-TGTGACAAATTATTTGGCAACTTTCTCCAATGAAGATACCCAAGTCCTGAG-T 717
Query 672 GAAGCCAAGGAGGAGGCTGTGCGTGCAGTTATCGAATTTGTCAAAGCTTCCACTATTTTT 731
|||||||||||||| ||||| || |||||||| ||||||||||| ||| ||| ||| |||
Sbjct 718 GAAGCCAAGGAGGAAGCTGTACGAGCAGTTATTGAATTTGTCAAGGCTCCCAGTATATTT 777
Query 732 CAGTGTGATTTATTGGACT-TGCCAGCCGTAGCACAATTGGAAAAGGATGCTAA-ATATG 789
|||||||||||||| ||| | ||||| || ||||| ||||| |||||| |||| | |||
Sbjct 778 CAGTGTGATTTATTAGACCAT-CCAGCTGTCGCACAGTTGGAGAAGGATCCTAACA-ATG 835
Query 790 CTCCGGTTTACCAGCTTCTGAAGATCTTTCTTACTCAGAGACTAAATGCCTACACGGAAT 849
| || ||||||||||| |||||||| |||||||||||||| ||| |||| |||| |||||
Sbjct 836 CACCAGTTTACCAGCTACTGAAGATTTTTCTTACTCAGAGGCTAGATGCATACATGGAAT 895
Query 850 TCCAAAATGCAAATCC-GGAATTTCTGCAAAGC-TATGGACTTG-CTGATGAAGATTGTG 906
|||||||||| ||| | ||| |||||||||| | || ||||||| | || ||||| ||||
Sbjct 896 TCCAAAATGCGAATTCAGGA-TTTCTGCAAA-CATACGGACTTGTC-GAGGAAGACTGTG 952
Query 907 TTTCGAAGATGAGATTGTTGTCACTAGTGGACTTGGCCTCAGATGAATCTGGCAAAATAC 966
| | |||||||| |||||||| ||||| || |||||||||||||| |||||||||||||
Sbjct 953 TAGCAAAGATGAGGTTGTTGTCCCTAGTTGATTTGGCCTCAGATGATTCTGGCAAAATAC 1012
Query 967 CTTACGCCTCAATTAAAGA-CGCTCTTCAGGTAAATGAAGAAGATGTTGAGTTATGGATC 1025
| || ||||| || || || | | || ||||||||||| || || ||||| || ||| |
Sbjct 1013 CGTATGCCTCGATCAA-GAACACCCTACAGGTAAATGACGAGGAGGTTGAATTGTGGGTG 1071
Query 1026 GTGAAGGCAATAACTGCAAAATTGATTGATTGTAAGATGGATCAGATGAACCAAGTTGTA 1085
|| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1072 GTTAAGGCAATAACTGCAAAATTGGTTGCTTGTAAGATGGATCAGATGAACCAAGTTGTA 1131
Query 1086 ATTGTCAG 1093
||||||||
Sbjct 1132 ATTGTCAG 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5