BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927703
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02250.1 | Symbols: | O-fucosyltransferase family protein |... 2597 0.0
> AT3G02250.1 | Symbols: | O-fucosyltransferase family protein
| chr3:423801-427061 REVERSE LENGTH=2608
Length=2608
Score = 2597 bits (1406), Expect = 0.0
Identities = 1517/1572 (97%), Gaps = 2/1572 (0%)
Strand=Plus/Plus
Query 12 TTTCAGAAAATGTGTAAAGCGGACAAGTTTCTATACCATAGGAAACTCTGGGAGATGAAG 71
||| ||||||||||||||||||| |||||||| || || |||||||||||||||||||||
Sbjct 677 TTTTAGAAAATGTGTAAAGCGGAGAAGTTTCTTTATCACAGGAAACTCTGGGAGATGAAG 736
Query 72 GTTAAGTTTCTAGGAGATAGTAAGATTGACAAGTTTAAGAACTCTTTGGTTTTGAGGTCT 131
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 737 GTTAAGTTTCTAGGAGATAGTAAGATTGACAAGCTTAAGAACTCCTTGGTTTTGAGGTCT 796
Query 132 CGTATGAGCCTATGGATGATTCGGGCTATGACTATATTGTTGCTCTGGAGTTGCTTTGTT 191
||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 797 CGTATGAGCTTATGGATGATTCGTGCTATGACTATATTGTTGCTATGGAGTTGCTTTGTT 856
Query 192 CATTTGGTTGCTATGGGAGAGATGTGGGGACCTAGATTGTTGAAAGGCTGGCCTTCTTGT 251
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 CATTTGGTTGCTGTGGGAGAGATGTGGGGACCTAGATTGTTGAAAGGCTGGCCTTCTTGT 916
Query 252 TTCAATCACCATGATTTACCAATGGCTGCACAAATGACTTCTCTTCCCATGAAAATCGCC 311
|||||||||||||| || || || |||||| |||||||||||||||||||||||||||||
Sbjct 917 TTCAATCACCATGACTTCCCCATTGCTGCAGAAATGACTTCTCTTCCCATGAAAATCGCC 976
Query 312 CTCCCACCTAAAAGGATATATCAGAACAATGGCTATCTTATGGTTTCTTGCAATGGAGGA 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 CTCCCACCTAAAAGGATATATCAGAACAATGGCTATCTTATGGTTTCTTGCAATGGAGGA 1036
Query 372 CTCAACCAAATGCGAGCAGCGATATGTGATATGGTCACTATTGCAAGATACATGAATGTC 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTCAACCAAATGCGAGCAGCGATATGTGATATGGTCACTATTGCAAGATACATGAATGTC 1096
Query 432 ACACTTATTGTGCCAGAGCTTGACAAGACCTCCTTTTGGAATGATCCAAGTGAGTTCAAA 491
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1097 ACACTTATTGTCCCAGAGCTTGACAAGACCTCGTTTTGGAATGATCCAAGTGAGTTCAAA 1156
Query 492 GACATATTCGACGTGGATCACTTCATAAGTTCTTTAAGAGATGAGGTTCGTATACTCAAA 551
||||||||||||||||| || ||||||||||||||||| || |||||||||||||| |||
Sbjct 1157 GACATATTCGACGTGGACCATTTCATAAGTTCTTTAAGGGACGAGGTTCGTATACTAAAA 1216
Query 552 GAGCTTCCTCCAAGGCTTAAGAGAAGGGTTAGGCTCGGGATGTACCACACCATGCCTCCT 611
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1217 GAGCTTCCTCCAAGGCTTAAGAGAAGGGTTAGGCTCGGGCTGTACCACACCATGCCTCCT 1276
Query 612 ATTAGCTGGTCCAACATGTCCTATTACCAAGACCAGATTCTTCCGCTGGTGAAGAAGCAT 671
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1277 ATTAGCTGGTCCAACATGTCCTACTACCAAGACCAGATTCTTCCGCTGGTGAAGAAGTAT 1336
Query 672 AAGGTCGTACATCTGAACAAGACCGATACTCGACTTGCTAATAACGAACTGCCTGTTGAG 731
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1337 AAGGTGGTACATCTGAACAAGACCGATACTCGACTTGCTAATAACGAACTACCTGTTGAG 1396
Query 732 ATTCAGAAGCTCCGATGCCGAGCAAATTTCAACGGGCTTAGGTTTACTCCAAAGATTGAG 791
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1397 ATTCAGAAGCTGCGATGCCGAGCAAATTTCAATGGGCTTAGGTTTACTCCAAAGATTGAG 1456
Query 792 GAATTGGGTAGAAGAGTAGTCAAGATTCTGAGGGAGAAAGGTCCCTTTCTAGTTCTGCAT 851
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1457 GAATTGGGTAGAAGAGTAGTCAAGATTCTCAGGGAGAAAGGTCCCTTTCTAGTTCTGCAT 1516
Query 852 CTCCGATACGAAATGGATATGTTGGCATTTTCTGGTTGCTCACATGGTTGTAACCGCTAC 911
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1517 CTCAGATACGAAATGGATATGTTGGCATTTTCTGGTTGCTCACATGGTTGCAACCGCTAC 1576
Query 912 GAAGAGGAAGAACTAACGAGAATGAGATATGCTTATCCGTGGTGGAAAGAGAAAGTAATA 971
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 GAAGAGGAAGAACTAACAAGAATGAGATATGCTTATCCGTGGTGGAAAGAGAAAGTAATA 1636
Query 972 GACTCCGAGTTGAAGAGGAAAGAAGGTCTTTGCCCATTGACTCCTGAAGAAACAGCTCTT 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1637 GACTCCGAGTTGAAGAGGAAAGAAGGTCTTTGCCCATTGACTCCTGAAGAAACAGCTCTT 1696
Query 1032 ACGCTATCTGCATTGGGTATTGACCGTAATGTTCAGATTTACATAGCTGCCGGAGAAATA 1091
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1697 ACGCTATCTGCATTGGGTATTGACCGAAATGTTCAGATTTACATAGCTGCAGGAGAAATA 1756
Query 1092 TATGGTGGTAAAAGGCGGTTAAAGGCTTTGACAGATGTTTTTCCAAATGTGGTGAGGAAA 1151
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1757 TACGGTGGTAAAAGGCGGTTAAAGGCTTTAACAGATGTTTTTCCAAATGTGGTGAGGAAA 1816
Query 1152 GAAACTCTACTCGATTCCTCTGATTTGAGTTTTTGTCAGAACCATTCTTCTCAAATGGCT 1211
||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct 1817 GAAACTCTACTCGATTCTTCTGATTTGAGTTTTTGTAAAAACCATTCTTCTCAAATGGCT 1876
Query 1212 GCTCTTGATTACCTTATCTCTCTCGAAAGTGATATATTCGTTCCTACATATTATGGGAAC 1271
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1877 GCTCTTGATTACCTTATCTCTCTCGAAAGTGATATATTCGTTCCTACTTATTACGGAAAC 1936
Query 1272 ATGGCGAAAGTCGTGGAAGGTCATCGCAGGTTCTTGGGGTTCAAGAAGACGATTGAGCTA 1331
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1937 ATGGCGAAAGTCGTGGAAGGTCATCGCAGGTTCTTGGGGTTCAAGAAGACAATTGAGCTA 1996
Query 1332 AACCGGAAGCTCTTGGTTAAGCTAATAGATGAATACTATGAAGGATTGTTGAGCTGGGAA 1391
||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1997 AACCGGAAGTTGTTGGTTAAGCTGATAGATGAATATTATGAAGGATTGTTGAGCTGGGAA 2056
Query 1392 GTGTTTTCAACCACGGTTAAGGCCTTTCACGCTACACGAATGGGAGGGCCAAAGAGACGG 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 GTGTTTTCAACCACGGTTAAGGCCTTTCACGCTACACGAATGGGAGGGCCAAAGAGACGG 2116
Query 1452 CTTGTGATTCCAAATAGACCGAAAGAAGAAGACTACTTCTATGCCAATCCATATGAATGT 1511
|| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2117 CTAGTGATTCCAAATAAACCGAAAGAAGAAGACTACTTCTATGCTAATCCATATGAATGT 2176
Query 1512 CTTCAGCTATTACATGAGAATAATGGCAATTCACTAGAAGAAACCATA-TGAACAGATCC 1570
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 2177 CTTCAGCTATTACATGAGAATAATGGCAATTCACTAGAAGAAACC-TAATGAACAGATCC 2235
Query 1571 TCCATTGTTGTC 1582
|||| |||||||
Sbjct 2236 TCCAATGTTGTC 2247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78112048020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5