BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927706
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02280.1 | Symbols: | Flavodoxin family protein | chr3:4534... 2928 0.0
AT3G24710.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 148 1e-34
> AT3G02280.1 | Symbols: | Flavodoxin family protein | chr3:453421-457841
FORWARD LENGTH=2201
Length=2201
Score = 2928 bits (1585), Expect = 0.0
Identities = 1805/1907 (95%), Gaps = 31/1907 (2%)
Strand=Plus/Plus
Query 1 CGGGTGGT-GAAGTGGCGGCGATGGGAGAAAAGCCGAGGAAGCTGCTTGTGATGTATGCT 59
|||||||| | ||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 127 CGGGTGGTGGCAGTGGCGGCGATGGGAGAAAAACAAAGGAAGCTGCTTGTGTTGTATGCC 186
Query 60 TCTCAGACCGGGAACGCTCTTGATGCGGCGGAGCGTATTGGCCGCGAAGCAGAACGCCGT 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 TCTCAGACCGGAAACGCTCTTGATGCGGCGGAGCGTATTGGCCGCGAAGCAGAACGCCGT 246
Query 120 GGATTTCCAGCATCTATCGTCTCCACCGACGAATTCGACGCGAGTTCCTTA-C-C-TCAT 176
||| | ||||| ||| ||||||||||||||||||||||| ||||||||||| | | ||||
Sbjct 247 GGACTGCCAGCTTCTGTCGTCTCCACCGACGAATTCGACACGAGTTCCTTACCTCATCAT 306
Query 177 GAGGAGGCTGTTGTTTTTGTTGTCTCCACTACAGGGCAAGGAGACTCTCCTGATTCCTTT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GAGGAGGCTGTTGTTTTTGTTGTCTCCACTACAGGGCAAGGAGACTCTCCTGATTCCTTT 366
Query 237 AAGGCATTTTGGAGGTTTCTTCTTCAAAGAAATCTGGGAAACTATTGGTTGCAACAAGTT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AAGGCATTTTGGAGGTTTCTTCTTCAAAGAAATCTGGGAAACTATTGGTTGCAACAAGTT 426
Query 297 CGCTATGCGGTGTTTGGATTAGGTGATTCTGGTTACCAGAAGTACAATTTTGTAGCAAAG 356
|||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 427 CGCTATGCAGTGTTTGGACTAGGTGATTCTGGTTACCAGAAGTACAACTTTGTAGCAAAG 486
Query 357 AAGCTAGACAAAAGATTATCAGATCTGGGGGCCACAACCATCATTGAAAAAGGTCTAGGA 416
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 487 AAGCTAGACAAAAGATTATCAGATCTTGGGGCCACAACCATCATTGAAAAAGGTCTAGGA 546
Query 417 GATGATCAACACCCATCAGGGTATGAAGGAACTCTTGATCCGTGGATGCTGTCTTTGTGG 476
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 547 GATGATCAACACCCATCAGGGTATGAAGGAACTCTTGATCCGTGGATGCTTTCTTTGTGG 606
Query 477 AGTACATTATACCAGATCAATCCAAAATACTTTCCTAGAGGTCCAGATGTGAAGATTCCT 536
|| |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 607 AGGACATTATATCAGATCAATCCAAAATACTTTCCTAAAGGTCCAGATGTGAAAATTCCT 666
Query 537 CAAGATGAAGTAATTGATCAGCCTAAATATAGGATTTTATATCATAAGCGGGAGAAATTG 596
|||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 667 CAAGATGAAGTAATTGATAAGCCTAAATATAGGATTTTATTTCATAAGCAGGAGAAATTG 726
Query 597 GAGCCTAAATTATTGACAGAGTCAGATATCATACAAAGAGCCCGTGGAATGTCCCCGGGA 656
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 727 GAGCCTAAATTATTGTCAGATTCAGATATCATACAAAGAGCCCGTGGAATGTCCCCAGGA 786
Query 657 AAATTATTCAAGGACAAAAGTAAACCAGACTGCTTTCTCAAGATGACCAGAAATGAAGTC 716
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 787 AAATTATTCAAGGACAAAAGTAAACCAGACTGCTTTCTCAAGATGACCCGCAATGAAGTC 846
Query 717 TTGACTAAAGCTGGAAGCACAAAGGATGTCCGCCACTTTGAGTTCCAATTTGTTTCTTCT 776
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 847 TTGACTAAAGCTGAAAGCACAAAGGATGTCCGCCACTTTGAGTTCCAGTTTGTTTCTTCT 906
Query 777 AATATTGAATATGAAGTCGGTGATGTTGTTGAGCTTCTTCCTAGCCAAAATCCTTCAGCA 836
| ||| ||||||||||| || |||||||||||||||||||| ||||||||| ||||||
Sbjct 907 ACTATCGAATATGAAGTTGGCGATGTTGTTGAGCTTCTTCCAAGCCAAAATTCTTCAGTG 966
Query 837 ATAGATGCGTTTATAGAACGCTGCGATTTAGACCCAGAATCATTCATCACAATTGGTCCG 896
|||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||
Sbjct 967 GTAGATGCGTTTATAGAACGCTGCGGTTTAGACCCAGAATCATTCATTACAGTTGGTCCG 1026
Query 897 AGAGAGACAGAGAATAGTAGTTTCAATGAAGAAATGATTACACAGCTCCCTATCAAGCTT 956
|||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||
Sbjct 1027 CGAGAGACAGAGAATAGTAGTTTTAGTGAAGAAATGATTACACAGATCCCTATTAAGCTT 1086
Query 957 AAGACTTTTGTTGAATTAACAATGGATGTTACATCCGCTTCACCTCGACGATACTTCTTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 AAGACTTTTGTTGAATTAACAATGGATGTTACATCCGCTTCACCTCGACGATACTTCTTT 1146
Query 1017 GAGGTTATGAGCTTCTATGCAACAGCTGAACATGAGAAGGAAAGACTTCAATACTTTGCC 1076
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GAGATTATGAGCTTCTATGCAACAGCTGAACATGAGAAGGAAAGACTTCAATACTTTGCC 1206
Query 1077 TCACCCGAGGGGCGGGATGATCTCTACAATTACAATCAGAAGGAAAGAAGGAGCATTCTT 1136
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1207 TCACCCGAGGGGCGGGATGATCTCTACAATTACAATCAGAAGGAAAGAAGAAGCATTCTT 1266
Query 1137 GAGGTGCTAGAGGATTTTCCTTCCGTACAAATCCCATTTGAGTGGCTAGTACAGTTAGTC 1196
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1267 GAGGTGCTAGAGGATTTTCCTTCCGTACAAATCCCTTTTGATTGGCTAGTACAGTTAGTC 1326
Query 1197 CCACCGCTAAAACCAAGAGCTTTTTCGATATCATCGTCTCCTTTGGCCCACCCTGCT-CA 1255
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1327 CCACCGCTAAAACCAAGAGCTTTTTCGATATCTTCGTCTCCTTTGGCCCACCCTGCCGCA 1386
Query 1256 AGTACATTTGACCGTAAGCATAGTATCATGGATCACGCCTTATAAGAGAACTCGAAAAGG 1315
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1387 -GTACATTTGACTGTAAGCATAGTATCATGGATCACGCCTTATAAGAGAACTCGGAAAGG 1445
Query 1316 TCTGTGCTCCTCTTGGCTTGCAAGCCTCACACCTGAACAAGAGGTAAACATACCGGTTTG 1375
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1446 TCTGTGCTCCTCTTGGCTTGCAAGCCTCGCACCTGAACAAGAGGTAAACATACCGGTTTG 1505
Query 1376 GTTTCACAAAGGCTCCCTTCCTGCTCCATCACAGTCGCTTCCGCTCATCTTAGTGGGACC 1435
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1506 GTTTCACAAAGGCTCCCTTCCTGCTCCATCTCAGTCGCTTCCGCTCATCTTAGTGGGACC 1565
Query 1436 TGGAACCGGATGTGCGCCTTTCCGTGGGTTCATAGCTGAGAGAGCCGTACAAGCTCAGTC 1495
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1566 CGGAACCGGATGTGCGCCATTCCGTGGATTCATAGCTGAGAGAGCCGTACAAGCTCAGTC 1625
Query 1496 TAGCCTGATTGCGCCCGTCATGTTCTTCTTCGGTTGCAGAAACAAAGACACAGACTTTCT 1555
||||| | |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1626 TAGCCCGGTTGCCCCCGTCATGTTCTTCTTTGGTTGCAGAAACAAAGACACAGACTTTCT 1685
Query 1556 ATACCGCGACTTCTGGGAGTCTCACGCAAGAGAAGGAGGCATGCTCTCTGAAGGAAAAGG 1615
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 ATACCGCGATTTCTGGGAGTCTCACGCAAGAGAAGGAGGCATGCTCTCTGAAGGAAAAGG 1745
Query 1616 CGGTGGCTTTTACACAGCGTTCTCTAGAGACCAACCGAAGAAGGTTTACGTGCAACATAA 1675
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1746 CGGTGGCTTTTACACAGCGTTCTCTAGAGACCAACCAAAGAAGGTTTACGTGCAACATAA 1805
Query 1676 GATCCGCGAAATGAGCAAGAAAGTTTGGGATTTACTCTGTGATGGAGCTGCTGTTTACGT 1735
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1806 GATCCGCGAAATGAGCAAGAGAGTTTGGGATTTACTCTGTGATGGAGCCGCTGTTTACGT 1865
Query 1736 GGCGGGCTCGTCGACGAAAATGCCTTGTGATGTGATGTCGGCTT-CG--GA----G-G-- 1785
|||||||||||||||||||||||||||||||||||||||||||| || || | |
Sbjct 1866 GGCGGGCTCGTCGACGAAAATGCCTTGTGATGTGATGTCGGCTTTCGAAGATATTGTGTC 1925
Query 1786 --AG-A--CAGGAGGA---TCAAAGGAGGTAGCTTCACGGTGGCTCAAGGCTTTGGAGAA 1837
|| | |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1926 GGAGGAGACAGGAGGAGGATCAAAGGAGGTAGCTTCACGGTGGCTTAAGGCTTTGGAGAA 1985
Query 1838 GGCAGGGAGGTACGAGGTACAATGTTGAAGCTTGGTCTTAACTCTCT 1884
| ||||||||||| | | |||||||||||||||||||||||||
Sbjct 1986 GACAGGGAGGTAC-A---A---TGTTGAAGCTTGGTCTTAACTCTCT 2025
> AT3G24710.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: Flavodoxin family protein (TAIR:AT3G02280.1); Has 175 Blast
hits to 175 proteins in 21 species: Archae - 0; Bacteria
- 6; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink). | chr3:9024167-9024367
REVERSE LENGTH=201
Length=201
Score = 148 bits (80), Expect = 1e-34
Identities = 171/210 (81%), Gaps = 26/210 (12%)
Strand=Plus/Plus
Query 1686 ATGAGCAAGAAAGTTTGGGATTTACTCTGTGATGGAGCTGCT-GTTTACGTGGCGGGCTC 1744
||||||||||||||||||||||| | ||||||||||||| | ||||| ||||| |||||
Sbjct 1 ATGAGCAAGAAAGTTTGGGATTTGTTATGTGATGGAGCTG-TCGTTTATGTGGCTGGCTC 59
Query 1745 GTCGACGA-AAATGCCTTGTGATGTGATGTCGGC--T--------TCG-G--AG--GAGA 1788
|||||| | ||||||| | |||||| |||||||| | | | | || ||||
Sbjct 60 GTCGAC-AGAAATGCCATCTGATGTAATGTCGGCTTTAGGGGAGATTGTGTCAGAAGAGA 118
Query 1789 CAGGAGGATCAAAGGAGGTAGCTTCACGGTGGCTCAAGGCTTTGGAGAAGGCAGGGAGGT 1848
| ||||||||||||||||| ||||||||| |||||||||||||||||||||| |
Sbjct 119 CGGGAGGATCAAAGGAGGTTGCTTCACGGCGGCTCAAGGCTTTGGAGAAGGC----A--C 172
Query 1849 ACGAGGTACAATGTTGAAGCTTGGTCTTAA 1878
| ||||||||||||||||||||||||||||
Sbjct 173 A-GAGGTACAATGTTGAAGCTTGGTCTTAA 201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93373013700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5