BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927706 Length=1886 Score E Sequences producing significant alignments: (Bits) Value AT3G02280.1 | Symbols: | Flavodoxin family protein | chr3:4534... 2928 0.0 AT3G24710.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 148 1e-34 > AT3G02280.1 | Symbols: | Flavodoxin family protein | chr3:453421-457841 FORWARD LENGTH=2201 Length=2201 Score = 2928 bits (1585), Expect = 0.0 Identities = 1805/1907 (95%), Gaps = 31/1907 (2%) Strand=Plus/Plus Query 1 CGGGTGGT-GAAGTGGCGGCGATGGGAGAAAAGCCGAGGAAGCTGCTTGTGATGTATGCT 59 |||||||| | ||||||||||||||||||||| | ||||||||||||||| ||||||| Sbjct 127 CGGGTGGTGGCAGTGGCGGCGATGGGAGAAAAACAAAGGAAGCTGCTTGTGTTGTATGCC 186 Query 60 TCTCAGACCGGGAACGCTCTTGATGCGGCGGAGCGTATTGGCCGCGAAGCAGAACGCCGT 119 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 187 TCTCAGACCGGAAACGCTCTTGATGCGGCGGAGCGTATTGGCCGCGAAGCAGAACGCCGT 246 Query 120 GGATTTCCAGCATCTATCGTCTCCACCGACGAATTCGACGCGAGTTCCTTA-C-C-TCAT 176 ||| | ||||| ||| ||||||||||||||||||||||| ||||||||||| | | |||| Sbjct 247 GGACTGCCAGCTTCTGTCGTCTCCACCGACGAATTCGACACGAGTTCCTTACCTCATCAT 306 Query 177 GAGGAGGCTGTTGTTTTTGTTGTCTCCACTACAGGGCAAGGAGACTCTCCTGATTCCTTT 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 GAGGAGGCTGTTGTTTTTGTTGTCTCCACTACAGGGCAAGGAGACTCTCCTGATTCCTTT 366 Query 237 AAGGCATTTTGGAGGTTTCTTCTTCAAAGAAATCTGGGAAACTATTGGTTGCAACAAGTT 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 367 AAGGCATTTTGGAGGTTTCTTCTTCAAAGAAATCTGGGAAACTATTGGTTGCAACAAGTT 426 Query 297 CGCTATGCGGTGTTTGGATTAGGTGATTCTGGTTACCAGAAGTACAATTTTGTAGCAAAG 356 |||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 427 CGCTATGCAGTGTTTGGACTAGGTGATTCTGGTTACCAGAAGTACAACTTTGTAGCAAAG 486 Query 357 AAGCTAGACAAAAGATTATCAGATCTGGGGGCCACAACCATCATTGAAAAAGGTCTAGGA 416 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 487 AAGCTAGACAAAAGATTATCAGATCTTGGGGCCACAACCATCATTGAAAAAGGTCTAGGA 546 Query 417 GATGATCAACACCCATCAGGGTATGAAGGAACTCTTGATCCGTGGATGCTGTCTTTGTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 547 GATGATCAACACCCATCAGGGTATGAAGGAACTCTTGATCCGTGGATGCTTTCTTTGTGG 606 Query 477 AGTACATTATACCAGATCAATCCAAAATACTTTCCTAGAGGTCCAGATGTGAAGATTCCT 536 || |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 607 AGGACATTATATCAGATCAATCCAAAATACTTTCCTAAAGGTCCAGATGTGAAAATTCCT 666 Query 537 CAAGATGAAGTAATTGATCAGCCTAAATATAGGATTTTATATCATAAGCGGGAGAAATTG 596 |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| Sbjct 667 CAAGATGAAGTAATTGATAAGCCTAAATATAGGATTTTATTTCATAAGCAGGAGAAATTG 726 Query 597 GAGCCTAAATTATTGACAGAGTCAGATATCATACAAAGAGCCCGTGGAATGTCCCCGGGA 656 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 727 GAGCCTAAATTATTGTCAGATTCAGATATCATACAAAGAGCCCGTGGAATGTCCCCAGGA 786 Query 657 AAATTATTCAAGGACAAAAGTAAACCAGACTGCTTTCTCAAGATGACCAGAAATGAAGTC 716 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 787 AAATTATTCAAGGACAAAAGTAAACCAGACTGCTTTCTCAAGATGACCCGCAATGAAGTC 846 Query 717 TTGACTAAAGCTGGAAGCACAAAGGATGTCCGCCACTTTGAGTTCCAATTTGTTTCTTCT 776 ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 847 TTGACTAAAGCTGAAAGCACAAAGGATGTCCGCCACTTTGAGTTCCAGTTTGTTTCTTCT 906 Query 777 AATATTGAATATGAAGTCGGTGATGTTGTTGAGCTTCTTCCTAGCCAAAATCCTTCAGCA 836 | ||| ||||||||||| || |||||||||||||||||||| ||||||||| |||||| Sbjct 907 ACTATCGAATATGAAGTTGGCGATGTTGTTGAGCTTCTTCCAAGCCAAAATTCTTCAGTG 966 Query 837 ATAGATGCGTTTATAGAACGCTGCGATTTAGACCCAGAATCATTCATCACAATTGGTCCG 896 |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| Sbjct 967 GTAGATGCGTTTATAGAACGCTGCGGTTTAGACCCAGAATCATTCATTACAGTTGGTCCG 1026 Query 897 AGAGAGACAGAGAATAGTAGTTTCAATGAAGAAATGATTACACAGCTCCCTATCAAGCTT 956 |||||||||||||||||||||| | ||||||||||||||||||| ||||||| |||||| Sbjct 1027 CGAGAGACAGAGAATAGTAGTTTTAGTGAAGAAATGATTACACAGATCCCTATTAAGCTT 1086 Query 957 AAGACTTTTGTTGAATTAACAATGGATGTTACATCCGCTTCACCTCGACGATACTTCTTT 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1087 AAGACTTTTGTTGAATTAACAATGGATGTTACATCCGCTTCACCTCGACGATACTTCTTT 1146 Query 1017 GAGGTTATGAGCTTCTATGCAACAGCTGAACATGAGAAGGAAAGACTTCAATACTTTGCC 1076 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1147 GAGATTATGAGCTTCTATGCAACAGCTGAACATGAGAAGGAAAGACTTCAATACTTTGCC 1206 Query 1077 TCACCCGAGGGGCGGGATGATCTCTACAATTACAATCAGAAGGAAAGAAGGAGCATTCTT 1136 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1207 TCACCCGAGGGGCGGGATGATCTCTACAATTACAATCAGAAGGAAAGAAGAAGCATTCTT 1266 Query 1137 GAGGTGCTAGAGGATTTTCCTTCCGTACAAATCCCATTTGAGTGGCTAGTACAGTTAGTC 1196 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 1267 GAGGTGCTAGAGGATTTTCCTTCCGTACAAATCCCTTTTGATTGGCTAGTACAGTTAGTC 1326 Query 1197 CCACCGCTAAAACCAAGAGCTTTTTCGATATCATCGTCTCCTTTGGCCCACCCTGCT-CA 1255 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1327 CCACCGCTAAAACCAAGAGCTTTTTCGATATCTTCGTCTCCTTTGGCCCACCCTGCCGCA 1386 Query 1256 AGTACATTTGACCGTAAGCATAGTATCATGGATCACGCCTTATAAGAGAACTCGAAAAGG 1315 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1387 -GTACATTTGACTGTAAGCATAGTATCATGGATCACGCCTTATAAGAGAACTCGGAAAGG 1445 Query 1316 TCTGTGCTCCTCTTGGCTTGCAAGCCTCACACCTGAACAAGAGGTAAACATACCGGTTTG 1375 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1446 TCTGTGCTCCTCTTGGCTTGCAAGCCTCGCACCTGAACAAGAGGTAAACATACCGGTTTG 1505 Query 1376 GTTTCACAAAGGCTCCCTTCCTGCTCCATCACAGTCGCTTCCGCTCATCTTAGTGGGACC 1435 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1506 GTTTCACAAAGGCTCCCTTCCTGCTCCATCTCAGTCGCTTCCGCTCATCTTAGTGGGACC 1565 Query 1436 TGGAACCGGATGTGCGCCTTTCCGTGGGTTCATAGCTGAGAGAGCCGTACAAGCTCAGTC 1495 ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1566 CGGAACCGGATGTGCGCCATTCCGTGGATTCATAGCTGAGAGAGCCGTACAAGCTCAGTC 1625 Query 1496 TAGCCTGATTGCGCCCGTCATGTTCTTCTTCGGTTGCAGAAACAAAGACACAGACTTTCT 1555 ||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1626 TAGCCCGGTTGCCCCCGTCATGTTCTTCTTTGGTTGCAGAAACAAAGACACAGACTTTCT 1685 Query 1556 ATACCGCGACTTCTGGGAGTCTCACGCAAGAGAAGGAGGCATGCTCTCTGAAGGAAAAGG 1615 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1686 ATACCGCGATTTCTGGGAGTCTCACGCAAGAGAAGGAGGCATGCTCTCTGAAGGAAAAGG 1745 Query 1616 CGGTGGCTTTTACACAGCGTTCTCTAGAGACCAACCGAAGAAGGTTTACGTGCAACATAA 1675 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1746 CGGTGGCTTTTACACAGCGTTCTCTAGAGACCAACCAAAGAAGGTTTACGTGCAACATAA 1805 Query 1676 GATCCGCGAAATGAGCAAGAAAGTTTGGGATTTACTCTGTGATGGAGCTGCTGTTTACGT 1735 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 1806 GATCCGCGAAATGAGCAAGAGAGTTTGGGATTTACTCTGTGATGGAGCCGCTGTTTACGT 1865 Query 1736 GGCGGGCTCGTCGACGAAAATGCCTTGTGATGTGATGTCGGCTT-CG--GA----G-G-- 1785 |||||||||||||||||||||||||||||||||||||||||||| || || | | Sbjct 1866 GGCGGGCTCGTCGACGAAAATGCCTTGTGATGTGATGTCGGCTTTCGAAGATATTGTGTC 1925 Query 1786 --AG-A--CAGGAGGA---TCAAAGGAGGTAGCTTCACGGTGGCTCAAGGCTTTGGAGAA 1837 || | |||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1926 GGAGGAGACAGGAGGAGGATCAAAGGAGGTAGCTTCACGGTGGCTTAAGGCTTTGGAGAA 1985 Query 1838 GGCAGGGAGGTACGAGGTACAATGTTGAAGCTTGGTCTTAACTCTCT 1884 | ||||||||||| | | ||||||||||||||||||||||||| Sbjct 1986 GACAGGGAGGTAC-A---A---TGTTGAAGCTTGGTCTTAACTCTCT 2025 > AT3G24710.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Flavodoxin family protein (TAIR:AT3G02280.1); Has 175 Blast hits to 175 proteins in 21 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:9024167-9024367 REVERSE LENGTH=201 Length=201 Score = 148 bits (80), Expect = 1e-34 Identities = 171/210 (81%), Gaps = 26/210 (12%) Strand=Plus/Plus Query 1686 ATGAGCAAGAAAGTTTGGGATTTACTCTGTGATGGAGCTGCT-GTTTACGTGGCGGGCTC 1744 ||||||||||||||||||||||| | ||||||||||||| | ||||| ||||| ||||| Sbjct 1 ATGAGCAAGAAAGTTTGGGATTTGTTATGTGATGGAGCTG-TCGTTTATGTGGCTGGCTC 59 Query 1745 GTCGACGA-AAATGCCTTGTGATGTGATGTCGGC--T--------TCG-G--AG--GAGA 1788 |||||| | ||||||| | |||||| |||||||| | | | | || |||| Sbjct 60 GTCGAC-AGAAATGCCATCTGATGTAATGTCGGCTTTAGGGGAGATTGTGTCAGAAGAGA 118 Query 1789 CAGGAGGATCAAAGGAGGTAGCTTCACGGTGGCTCAAGGCTTTGGAGAAGGCAGGGAGGT 1848 | ||||||||||||||||| ||||||||| |||||||||||||||||||||| | Sbjct 119 CGGGAGGATCAAAGGAGGTTGCTTCACGGCGGCTCAAGGCTTTGGAGAAGGC----A--C 172 Query 1849 ACGAGGTACAATGTTGAAGCTTGGTCTTAA 1878 | |||||||||||||||||||||||||||| Sbjct 173 A-GAGGTACAATGTTGAAGCTTGGTCTTAA 201 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93373013700 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5