BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927709 Length=793 Score E Sequences producing significant alignments: (Bits) Value AT3G02310.1 | Symbols: SEP2, AGL4 | K-box region and MADS-box t... 1339 0.0 AT5G15800.2 | Symbols: SEP1, AGL2 | K-box region and MADS-box t... 726 0.0 > AT3G02310.1 | Symbols: SEP2, AGL4 | K-box region and MADS-box transcription factor family protein | chr3:464279-467074 REVERSE LENGTH=1415 Length=1415 Score = 1339 bits (725), Expect = 0.0 Identities = 773/796 (97%), Gaps = 4/796 (1%) Strand=Plus/Plus Query 1 GGAtttttttGGGG-GA--AAAAATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGA 57 ||| |||||||||| || ||| ||||||||||||||||||||||||||||||||||||| Sbjct 366 GGA-TTTTTTGGGGTGAGGAAAGATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGA 424 Query 58 ACAAAATCAACAGACAAGTGACGTTTGCTAAACGTAGGAATGGTTTGTTGAAAAAAGCTT 117 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 425 ACAAAATCAACAGACAAGTGACGTTTGCTAAACGTAGAAATGGTTTGCTGAAAAAAGCTT 484 Query 118 ATGAGCTTTCTGTTCTCTGCGATGCTGAGGTCTCTCTCATCGTCTTCTCCAACCGTGGCA 177 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 485 ATGAGCTTTCTGTTCTCTGCGATGCTGAAGTCTCTCTCATCGTCTTCTCCAACCGTGGCA 544 Query 178 AGCTCTACGAGTTCTGCAGCACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGT 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 AGCTCTACGAGTTCTGCAGCACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGT 604 Query 238 GTAGCTATGGCTCCATTGAAGTCAACAACAAACCTGCTAAAGAACTTGAGAACAGCTACA 297 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 605 GTAGCTATGGCTCCATTGAAGTCAACAACAAACCTGCTAAAGAGCTTGAGAACAGCTACA 664 Query 298 GAGAGTATTTGAAGCTGAAAGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTC 357 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 GAGAGTACTTGAAGCTGAAAGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTC 724 Query 358 TTGGAGAGGACCTTGGACCTCTGAACTCAAAGGAGCTAGAGCAGCTGGAGCGTCAACTAG 417 |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 725 TTGGAGAGGATCTTGGACCTCTGAATTCAAAGGAGCTAGAGCAGCTTGAGCGTCAACTAG 784 Query 418 ACGGCTCTCTGAAGCAAGTTCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTG 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 785 ACGGCTCTCTGAAGCAAGTTCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTG 844 Query 478 ATCTTCAAGGTAAGGAGCATATCTTGCTTGAAGCCAACAGAGCTTTGTCAATGAAGCTGG 537 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 845 ATCTTCAAGGTAAGGAGCATATCTTGCTTGATGCCAACAGAGCTTTGTCAATGAAGCTGG 904 Query 538 AAGATATGATCGGCGTGAGACATCACCATATAGGAGGAGCATGGGAAGGTGGTGATCAAC 597 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 905 AAGATATGATCGGCGTGAGACATCACCATATAGGAGGAGGATGGGAAGGTGGTGATCAAC 964 Query 598 ATAACGTTGCATATGGACATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAAT 657 | || |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 965 AGAATATTGCCTATGGACATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAAT 1024 Query 658 GTGATCCCACTTTGCAAATTGGATATAGCCATCCAGTGTGTTCAGAGCAAATGGCTGTGA 717 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1025 GTGATCCCACTTTGCAAATTGGATATAGCCATCCAGTGTGCTCAGAGCAAATGGCTGTGA 1084 Query 718 CGGCGCAAGGTCAGTCCCAACCAGGACACGGCTACATCCCTGGCTGGATGCTGTGAGCGA 777 ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 1085 CGGTGCAAGGTCAGTCCCAACAAGGAAACGGCTACATCCCTGGCTGGATGCTGTGAGCGA 1144 Query 778 TACTTCTTCCCCCAAT 793 |||||||||||||||| Sbjct 1145 TACTTCTTCCCCCAAT 1160 > AT5G15800.2 | Symbols: SEP1, AGL2 | K-box region and MADS-box transcription factor family protein | chr5:5151334-5154154 REVERSE LENGTH=1436 Length=1436 Score = 726 bits (393), Expect = 0.0 Identities = 584/674 (87%), Gaps = 22/674 (3%) Strand=Plus/Plus Query 16 AAA-AAATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGAACAAAATCAACAGACAA 74 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 382 AAAGAAATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACAAAATCAACAGACAA 441 Query 75 GTGACGTTTGCTAAA-CGTAGGAATGGTTTGTTGAAAAAAGCTTATGAGCTT-TCTGTTC 132 || |||||||| ||| |||||||| ||||||||||| ||||||||||| || ||||||| Sbjct 442 GTAACGTTTGC-AAAGCGTAGGAACGGTTTGTTGAAGAAAGCTTATGAA-TTGTCTGTTC 499 Query 133 TCTGCGATGCTGAGGTCT-CTCTCATCGTCTTCTCCAACCGTGGCAAGCTCTACGAGTTC 191 |||| |||||||| || | |||||||| |||||||||||||||| |||||||| ||||| Sbjct 500 TCTGTGATGCTGAAGT-TGCTCTCATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTT 558 Query 192 TGCAGCACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGTGTAGCTATGGCTCC 251 |||||| |||| ||||||||||||||||| || |||| ||||| || |||||||| ||| Sbjct 559 TGCAGCTCCTCAAACATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCC 618 Query 252 ATTGAAGTCAACAACAAACCTGCTAAAGAACTTGAGAACAGCTACAGAGAGTATTTGAAG 311 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| Sbjct 619 ATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAGAACAGCTACAGAGAATATCTGAAG 678 Query 312 CTGAAAGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTCTTGGAGAGGACCTT 371 || || ||||||||||| || || |||||||| ||||||||||||||||| ||||| || Sbjct 679 CTTAAGGGTAGATATGAGAACCTTCAACGTCAACAGAGAAATCTTCTTGGGGAGGAT-TT 737 Query 372 -GGACCTCTGAACTCAAAGGAGCTAGAGCAGCTGGAGCGTCAACTAGACGGCTCTCTGAA 430 |||||| |||| ||||||||| |||||||||| ||||||||||| ||||||||||| || Sbjct 738 AGGACCTTTGAATTCAAAGGAGTTAGAGCAGCTTGAGCGTCAACTGGACGGCTCTCTCAA 797 Query 431 GCAAGTTCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTGATCTTCAAGGTAA 490 ||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||| ||| Sbjct 798 GCAAGTTCGGTCCATCAAGACACAGTACATGCTTGACCAGCTCTCGGATCTTCAAAATAA 857 Query 491 GGAGCATATCTTGCTTGAAGCCAACAGAGCTTTGTCAATGAAGCTGGAAGATATGATCGG 550 ||||| || ||||||||| |||| ||||||||| ||||||||||||| |||||||| || Sbjct 858 AGAGCAAATGTTGCTTGAAACCAATAGAGCTTTGGCAATGAAGCTGGATGATATGATTGG 917 Query 551 CGTGAGACA-TCACCATAT---AGGAGGAGCA---TGGGAAGGTGGTGATCAACATAACG 603 |||||| | ||| ||||| |||||||| | |||||||||||||| | || || | Sbjct 918 TGTGAGA-AGTCATCATATGGGAGGAGGAGGAGGATGGGAAGGTGGTGA--A-CAGAATG 973 Query 604 TTGCATATG-GACATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAATGTGAT 662 || | || | | |||| ||| ||||| ||||||||||||||||| |||||||||| || Sbjct 974 TTACCTACGCG-CATCATCAAGCTCAGTCTCAGGGACTATACCAGCCTCTTGAATGCAAT 1032 Query 663 CCCACTTTGCAAAT 676 || ||| ||||||| Sbjct 1033 CCAACTCTGCAAAT 1046 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38579824896 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5