BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927709
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02310.1 | Symbols: SEP2, AGL4 | K-box region and MADS-box t... 1339 0.0
AT5G15800.2 | Symbols: SEP1, AGL2 | K-box region and MADS-box t... 726 0.0
> AT3G02310.1 | Symbols: SEP2, AGL4 | K-box region and MADS-box
transcription factor family protein | chr3:464279-467074 REVERSE
LENGTH=1415
Length=1415
Score = 1339 bits (725), Expect = 0.0
Identities = 773/796 (97%), Gaps = 4/796 (1%)
Strand=Plus/Plus
Query 1 GGAtttttttGGGG-GA--AAAAATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGA 57
||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 366 GGA-TTTTTTGGGGTGAGGAAAGATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGA 424
Query 58 ACAAAATCAACAGACAAGTGACGTTTGCTAAACGTAGGAATGGTTTGTTGAAAAAAGCTT 117
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 425 ACAAAATCAACAGACAAGTGACGTTTGCTAAACGTAGAAATGGTTTGCTGAAAAAAGCTT 484
Query 118 ATGAGCTTTCTGTTCTCTGCGATGCTGAGGTCTCTCTCATCGTCTTCTCCAACCGTGGCA 177
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 485 ATGAGCTTTCTGTTCTCTGCGATGCTGAAGTCTCTCTCATCGTCTTCTCCAACCGTGGCA 544
Query 178 AGCTCTACGAGTTCTGCAGCACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 AGCTCTACGAGTTCTGCAGCACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGT 604
Query 238 GTAGCTATGGCTCCATTGAAGTCAACAACAAACCTGCTAAAGAACTTGAGAACAGCTACA 297
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 605 GTAGCTATGGCTCCATTGAAGTCAACAACAAACCTGCTAAAGAGCTTGAGAACAGCTACA 664
Query 298 GAGAGTATTTGAAGCTGAAAGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTC 357
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GAGAGTACTTGAAGCTGAAAGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTC 724
Query 358 TTGGAGAGGACCTTGGACCTCTGAACTCAAAGGAGCTAGAGCAGCTGGAGCGTCAACTAG 417
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 725 TTGGAGAGGATCTTGGACCTCTGAATTCAAAGGAGCTAGAGCAGCTTGAGCGTCAACTAG 784
Query 418 ACGGCTCTCTGAAGCAAGTTCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 ACGGCTCTCTGAAGCAAGTTCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTG 844
Query 478 ATCTTCAAGGTAAGGAGCATATCTTGCTTGAAGCCAACAGAGCTTTGTCAATGAAGCTGG 537
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 845 ATCTTCAAGGTAAGGAGCATATCTTGCTTGATGCCAACAGAGCTTTGTCAATGAAGCTGG 904
Query 538 AAGATATGATCGGCGTGAGACATCACCATATAGGAGGAGCATGGGAAGGTGGTGATCAAC 597
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 905 AAGATATGATCGGCGTGAGACATCACCATATAGGAGGAGGATGGGAAGGTGGTGATCAAC 964
Query 598 ATAACGTTGCATATGGACATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAAT 657
| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 AGAATATTGCCTATGGACATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAAT 1024
Query 658 GTGATCCCACTTTGCAAATTGGATATAGCCATCCAGTGTGTTCAGAGCAAATGGCTGTGA 717
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1025 GTGATCCCACTTTGCAAATTGGATATAGCCATCCAGTGTGCTCAGAGCAAATGGCTGTGA 1084
Query 718 CGGCGCAAGGTCAGTCCCAACCAGGACACGGCTACATCCCTGGCTGGATGCTGTGAGCGA 777
||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1085 CGGTGCAAGGTCAGTCCCAACAAGGAAACGGCTACATCCCTGGCTGGATGCTGTGAGCGA 1144
Query 778 TACTTCTTCCCCCAAT 793
||||||||||||||||
Sbjct 1145 TACTTCTTCCCCCAAT 1160
> AT5G15800.2 | Symbols: SEP1, AGL2 | K-box region and MADS-box
transcription factor family protein | chr5:5151334-5154154
REVERSE LENGTH=1436
Length=1436
Score = 726 bits (393), Expect = 0.0
Identities = 584/674 (87%), Gaps = 22/674 (3%)
Strand=Plus/Plus
Query 16 AAA-AAATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGAACAAAATCAACAGACAA 74
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 382 AAAGAAATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACAAAATCAACAGACAA 441
Query 75 GTGACGTTTGCTAAA-CGTAGGAATGGTTTGTTGAAAAAAGCTTATGAGCTT-TCTGTTC 132
|| |||||||| ||| |||||||| ||||||||||| ||||||||||| || |||||||
Sbjct 442 GTAACGTTTGC-AAAGCGTAGGAACGGTTTGTTGAAGAAAGCTTATGAA-TTGTCTGTTC 499
Query 133 TCTGCGATGCTGAGGTCT-CTCTCATCGTCTTCTCCAACCGTGGCAAGCTCTACGAGTTC 191
|||| |||||||| || | |||||||| |||||||||||||||| |||||||| |||||
Sbjct 500 TCTGTGATGCTGAAGT-TGCTCTCATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTT 558
Query 192 TGCAGCACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGTGTAGCTATGGCTCC 251
|||||| |||| ||||||||||||||||| || |||| ||||| || |||||||| |||
Sbjct 559 TGCAGCTCCTCAAACATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCC 618
Query 252 ATTGAAGTCAACAACAAACCTGCTAAAGAACTTGAGAACAGCTACAGAGAGTATTTGAAG 311
||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 619 ATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAGAACAGCTACAGAGAATATCTGAAG 678
Query 312 CTGAAAGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTCTTGGAGAGGACCTT 371
|| || ||||||||||| || || |||||||| ||||||||||||||||| ||||| ||
Sbjct 679 CTTAAGGGTAGATATGAGAACCTTCAACGTCAACAGAGAAATCTTCTTGGGGAGGAT-TT 737
Query 372 -GGACCTCTGAACTCAAAGGAGCTAGAGCAGCTGGAGCGTCAACTAGACGGCTCTCTGAA 430
|||||| |||| ||||||||| |||||||||| ||||||||||| ||||||||||| ||
Sbjct 738 AGGACCTTTGAATTCAAAGGAGTTAGAGCAGCTTGAGCGTCAACTGGACGGCTCTCTCAA 797
Query 431 GCAAGTTCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTGATCTTCAAGGTAA 490
||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 798 GCAAGTTCGGTCCATCAAGACACAGTACATGCTTGACCAGCTCTCGGATCTTCAAAATAA 857
Query 491 GGAGCATATCTTGCTTGAAGCCAACAGAGCTTTGTCAATGAAGCTGGAAGATATGATCGG 550
||||| || ||||||||| |||| ||||||||| ||||||||||||| |||||||| ||
Sbjct 858 AGAGCAAATGTTGCTTGAAACCAATAGAGCTTTGGCAATGAAGCTGGATGATATGATTGG 917
Query 551 CGTGAGACA-TCACCATAT---AGGAGGAGCA---TGGGAAGGTGGTGATCAACATAACG 603
|||||| | ||| ||||| |||||||| | |||||||||||||| | || || |
Sbjct 918 TGTGAGA-AGTCATCATATGGGAGGAGGAGGAGGATGGGAAGGTGGTGA--A-CAGAATG 973
Query 604 TTGCATATG-GACATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAATGTGAT 662
|| | || | | |||| ||| ||||| ||||||||||||||||| |||||||||| ||
Sbjct 974 TTACCTACGCG-CATCATCAAGCTCAGTCTCAGGGACTATACCAGCCTCTTGAATGCAAT 1032
Query 663 CCCACTTTGCAAAT 676
|| ||| |||||||
Sbjct 1033 CCAACTCTGCAAAT 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5