BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927724
Length=703
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02430.1 | Symbols: | Protein of unknown function (DUF679) ... 1116 0.0
> AT3G02430.1 | Symbols: | Protein of unknown function (DUF679)
| chr3:499345-500174 FORWARD LENGTH=830
Length=830
Score = 1116 bits (604), Expect = 0.0
Identities = 663/692 (96%), Gaps = 1/692 (0%)
Strand=Plus/Plus
Query 9 ATCAAAATTAAAAAGATGTCTGCCCTACGGCTAAGAAACGCAAACACTCCTGCTCCGGAG 68
||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 ATCAAAACTAAAAAGATGTCTGCCCTTCGGCTAAGAAACGCAAACACTCCGGCTCCGGAG 60
Query 69 CTCGACGAGTTTTCCGATCAGACACCGTCAGATTCACGGGTGCTCAAGAGACAGATGTCG 128
||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 61 CTCGACGAGTTATCCGATCAGACACCGTCAGAATCCCGGGTGCTCAAGAGACAGATGTCA 120
Query 129 ATATCTCAGCGAGCCATGTCAAACACCCTGACGTCAGCAGCCAATCTCTCAAACCTCCTA 188
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 ATGTCTCAGCGAGCCATGTCAAACACCCTGACGTCAGCAGCCAATCTCTCAAACCTACTC 180
Query 189 CCAACGGGAACACTCCTCGCGTTTCAACTCCTAACGCCGGTTTTCACTTCAAACGGCGTT 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAACGGGAACACTCCTCGCGTTTCAACTCCTAACGCCGGTTTTCACTTCAAACGGCGTT 240
Query 249 TGCGACCACGCAACGCGTTTCCTAACCGCCGTTCTCCTCTTCCTCTTAGCCGCGTCTTGC 308
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TGCGACCACGCAACGCGTTTCCTAACCGCCGTTCTCCTTTTCCTCTTAGCCGCGTCTTGC 300
Query 309 TTCGTCAGCTCCTTCACCGATAGCGTTAAAGCCGAGGATGGAACAATCTACTTCGGTTTC 368
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 301 TTCGTCAGCTCCTTTACCGATAGCGTTAAAGCCGACGATGGAACTATCTACTTCGGTTTC 360
Query 369 GTCACGTTCAAAGGCATGTGGGTCGTTGACTATCCTGACCCGTCCGGATTGGGTTTACCC 428
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 361 GTAACGTTCAAAGGCATGTGGGTCGTTGACTATCCTGACCCGTCCGGGTTAGGTTTACCC 420
Query 429 GATTTAGCCAAATATCGGATGCGGGTCGTTGATTGGATCCACGCTACGTTGTCGGTTTTA 488
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 GATTTAGCCAAATATCGGATGCGGTTCGTTGATTGGATCCACGCTACGTTGTCGGTTTTA 480
Query 489 GTGTTTGGAGCGGTTGCGTTGAGAGATAAGTATATAACTGATTGCTTTTGTCCGTCGCCG 548
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 481 GTGTTTGGAGCGGTTGCGTTGAGAGACAAGTATATAACTGATTGCTTTTATCCGTCGCCG 540
Query 549 GAGGCAGAGACGAAACATGTCTTGGACATTGTTCCGGTGGGTGTTGGGGTTATGTGTAGT 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGGCAGAGACGAAACATGTCTTGGACATTGTTCCGGTGGGTGTTGGGGTTATGTGTAGC 600
Query 609 CTTTTGTTTATGGTTTTTCCGGCGAGGCGTCACGGGATTGGATATCTTGTTACCGGTAGC 668
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 601 CTTTTGTTTATGGTTTTTCCGGCGAGACGCCACGGAATTGGATATCTTGTTACCGGTAGC 660
Query 669 GTTGATCGCCGGTGATTTACATTTAAA-CCAA 699
|| |||||||| ||||||| | ||||| ||||
Sbjct 661 GTAGATCGCCGATGATTTATAATTAAAACCAA 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34058751666
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5