BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927726
Length=1892
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02450.1 | Symbols: | cell division protein ftsH, putative ... 2979 0.0
> AT3G02450.1 | Symbols: | cell division protein ftsH, putative
| chr3:502707-505230 REVERSE LENGTH=2238
Length=2238
Score = 2979 bits (1613), Expect = 0.0
Identities = 1819/1915 (95%), Gaps = 28/1915 (1%)
Strand=Plus/Plus
Query 1 GGATTCCAGGAAAGAGAATCCATGGCTACTTTCAATGTTCTTTGTAGCAATCGGTTTCTA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 180 GGATTCCAGGATAGAGAATCCATGGCTACTTTCAATGTTCTTTGTAGCAATCGATTTAGA 239
Query 61 TTCAAAGGAGGTTATTCTCCGGAGAAATCTATTAGAAAGTTGTCTTCGAGGAGTTGTGAG 120
||||| |||||||||||||||||||||| || ||||||| |||||||||||||| |||||
Sbjct 240 TTCAATGGAGGTTATTCTCCGGAGAAATTTAATAGAAAGGTGTCTTCGAGGAGTAGTGAG 299
Query 121 CTTAATGTTTGTGTAGCTAGAACCAGGAGGAATCAATCGTTTAGTTGCAGGAGACTTGGT 180
|||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||
Sbjct 300 CTTAATGTTTGTGTCTCTAGAATC---AGGACTCAATCGTTTAGTTGCAGGAGACTTGGT 356
Query 181 GGGTTTCTGGAAATTGGTGATACCAGATTAGGGG---TTAGA---AATGG-G----T--T 227
|||||| ||||||||||||| ||||||||||||| ||||| |||| | | |
Sbjct 357 GGGTTTATGGAAATTGGTGAAACCAGATTAGGGGTTATTAGAGTTCATGGCGATTCTCGT 416
Query 228 --T-G----T-TTGTAATAGCGAGATTAAGCGACTTGTGAGC-GGTGATTACGGAGATAA 278
| | | ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 417 AATAGATTTTCTTGTAATAGCGAGATTAAGCGACTTGTGA-CTGGTGATTACGGAGATAA 475
Query 279 AGAGACTCGTATTGGTGAAAATGGTAGAAACAAAGGGAAGAGAAGAAGGTTTTCTCTTAG 338
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GGAGACTCGTATTGGTGAAAATGGTAGAAACAAAGGGAAGAGAAGAAGGTTTTCTCTTAG 535
Query 339 GCTTCGACCTAGATTACGATTAGTGAGAATGAGACTTGGGAGATTTGATTTCAGAGCATC 398
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 536 GCTTCGACCTAGATTACGATTAGTGAGAATGAGACTTGGCAGATTTGATTTCAGAGCATC 595
Query 399 AATGGAAGATTTTCGATATTTTTTGAAAAAGAATATCAAAAGAGTGATCTTGTCCACCGG 458
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 596 AATGGAAGATTTTCGATATTTTTTGAAAAAGAATCTCAAAAGAGTGATCTTGTCCACCGG 655
Query 459 TGTGGCTTTAATCTTTGGACTGTGTTATTTGTTCTTGAGGTTAACTGCTGTTCCGTCCCC 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TGTGGCTTTAATCTTTGGACTGTGTTATTTGTTCTTGAGGTTAACTGCTGTTCCGTCCCC 715
Query 519 ATCCATTGTTCCTTATTCAGATTTCGTAACGAATCTTCGAGGTGGTTCTGTTTCAAAGGT 578
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 716 ATCCATTGTTCCTTACTCAGATTTCGTTACGAATCTTCGAGGTGGTTCTGTTTCAAAGGT 775
Query 579 TTTGCTCGAAGAAGGCTCTCGTCGAATCTATTACAACACTGATGAGAATGTTGAGGTTGT 638
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTTGCTCGAAGAAGGCTCACGTCGAATCTATTACAACACTGATGAGAATGTTGAGGTTGT 835
Query 639 TGATGATCTTCACAAGTCTGAAACTTTAGAAGATCCGGCAATCCAAATTGATGGCGGCAC 698
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TGATGATGTTCACAAGTCTGAAACTTTAGAAGATCCGGCAATCCAAATTGATGGCGGCAC 895
Query 699 AGTGACGGAAGCTGTTACGAAAGACGATACTCCGCGAAAGGTTCGAGCTTTGACTCCTGT 758
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 896 AGTGACAGAAGCTGTTACGAAAGACGATACTCCGCGAAAGGTTCGAGCTTTGCCTCCTGT 955
Query 759 GTGGAAGTATGTGACAAGAAAAGTCGATCATGATGAGAAGTTTCTTCTTAGCTTAATGAG 818
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 956 GTGGAAGTATGTGACAAGAAAAGTCGATCATGATGAGAAGTTTCTTCTTAGTTTAATGAG 1015
Query 819 AGAGAAAGGCATTACTTATAGTTCAGCTCCTCAATCTGCATTGATGTCAATGAGAACTAC 878
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1016 AGAGAAAGGCATTACTTATAGTTCAGCTCCTCAATCCGCATTGATGTCAATGAGAACTAC 1075
Query 879 TTTGATAACAATCATCTCTCTGTGGATTCCTTTGACACCTCTTATGTGGCTTCTTTATCG 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTTGATAACAATCATCTCTCTGTGGATTCCTTTGACACCTCTTATGTGGCTTCTTTATCG 1135
Query 939 GCAACTCTCGGCATCTAACAGCCCTGCGAAGAAACGACGGTCTAAAAATCCCACGGTTGG 998
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1136 GCAACTCTCAGCATCTAACAGCCCTGCGAAGAAACGACGGTCTAAAAATCCCACTGTTGG 1195
Query 999 ATTCGATGATGTTGAGGGTGTTGATTCTGCCAAAGATGAGCTCGTGGAGATAGTGTCATG 1058
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 1196 CTTCGATGATGTTGAGGGTGTTGATTCTGCTAAAGACGAGCTCGTGGAGATAGTCTCATG 1255
Query 1059 TCTTCAAGGAAGTATAAACTACAAAAAATTAGGAGCAAGATTACCGAGAGGTGTGCTTTT 1118
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1256 TCTTCAAGGAAGTATAAACTACAAAAAACTAGGAGCAAGATTACCGAGAGGTGTGCTTTT 1315
Query 1119 GGTCGGTCCACCAGGGACTGGTAAAACCTTGTTGGCTCGGGCTGTAGCTGGAGAAGCGGG 1178
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GGTCGGTCCACCAGGGACCGGTAAAACCTTGTTGGCTCGGGCTGTAGCTGGAGAAGCGGG 1375
Query 1179 AGTTCCGTTTTTCTCTGTTTCCGCTAGTGAGTTTGTTGAATTGTTTGTTGGAAGAGGCGC 1238
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AGTTCCATTTTTCTCTGTCTCCGCTAGTGAGTTTGTTGAATTGTTTGTTGGAAGAGGCGC 1435
Query 1239 AGCGCGAATCAGAGATCTTTTCAATGCAGCCAGGAAAAACTCACCTTCCATTATATTCAT 1298
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1436 AGCGCGAATCAGAGATCTTTTCAATGCAGCAAGGAAAAACTCACCTTCCATTATATTCAT 1495
Query 1299 TGATGAGCTTGATGCGGTTGGAGGAAAACGTGGTAGGAGTTTCAATGATGAACGTGACCA 1358
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1496 TGATGAGCTTGATGCGGTTGGAGGAAAACGCGGTAGGAGTTTCAACGATGAACGTGACCA 1555
Query 1359 GACGCTAAACCAGTTGCTTACTGAGATGGATGGATTCGAGTCAGACACAAAAGTTATTGT 1418
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1556 GACGTTAAACCAGTTGCTTACTGAGATGGATGGATTCGAGTCAGACACGAAAGTCATTGT 1615
Query 1419 AATTGCAGCAACTAACCGACCAGAAGCGTTAGACTCAGCTCTTTGTCGACCTGGAAGGTT 1478
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1616 AATTGCAGCAACTAACCGACCAGAAGCGTTAGACTCGGCTCTTTGTCGGCCTGGAAGGTT 1675
Query 1479 CTCTAGAAAAGTTGTGGTTGCAGAACCAGACCAAGAAGGCCGTCGGAAAATCTTGGCCGT 1538
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1676 CTCTAGAAAAGTTTTGGTTGCAGAACCAGACCAAGAAGGCCGTCGGAAAATCTTGGCCAT 1735
Query 1539 ACATTTGAGAGACGTCCCTCTAGAAGAAGATGCATTTCTCATATGTGATCTGGTTGCTTC 1598
|||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 ACATCTGAGAGACGTTCCTTTAGAAGAAGATGCATTTCTCATATGTGATCTGGTTGCTTC 1795
Query 1599 TTTAACTCCCGGATTCGTAGGTGCTGATCTCGCCAACATTGTCAATGAAGCTGCATTGCT 1658
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1796 TTTAACTCCCGGATTTGTAGGTGCTGATCTCGCCAATATTGTCAATGAAGCTGCATTGCT 1855
Query 1659 AGCTGCTCGAAGAGGAGGAGAAGCGGTGGCACGGGAAGATATAATGGAAGCGATAGAGAG 1718
|||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1856 TGCTGCTCGTAGAGGCGGAGAAGCGGTGGCACGGGAAGATATAATGGAAGCTATAGAGAG 1915
Query 1719 GGCAAAATTCGGGATCAATGATAAGGAAGTGAGGCCAAGGACATTAGGAAATGAGCTAAG 1778
|| || |||||||||||||||||||||| |||||||||||| ||||||||||| || ||
Sbjct 1916 AGCGAAGTTCGGGATCAATGATAAGGAAGCGAGGCCAAGGACGTTAGGAAATGAACTCAG 1975
Query 1779 CAAGCTGTTCCCATGGATGCCATCTTTAGG-TAGAAGGAACGGACCAGATCAAGACGGTT 1837
|||| |||||||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 1976 CAAGATGTTCCCATGGATGCCATCTTT-GGCTAGAAGAAACGGACCAGATCAAGACGGTT 2034
Query 1838 TACAAGGACCGTTAGGCTATCAAACTCTCAGCTAAACCAAAACAAGACAAACCGG 1892
|||||||||||||||| |||||||||||||||||||||||| ||||||| |||||
Sbjct 2035 TACAAGGACCGTTAGGTTATCAAACTCTCAGCTAAACCAAACCAAGACAGACCGG 2089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93674216970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5