BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927732
Length=2044
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02490.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3064 0.0
AT5G15980.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1432 0.0
> AT3G02490.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:513525-515925 FORWARD LENGTH=2401
Length=2401
Score = 3064 bits (1659), Expect = 0.0
Identities = 1918/2041 (94%), Gaps = 26/2041 (1%)
Strand=Plus/Plus
Query 3 CTTAGATTGAAAGAAAGGATGAGGTATCAATGGAGGAGGTTGCTACTTTTTCGGAGTTAT 62
||||||| || | ||||||||||||||||||| || | ||| ||||| ||||| ||
Sbjct 65 CTTAGATAGACATTAAGGATGAGGTATCAATGG-CGA--TCGCTTCTTTTCCGGAGCTAC 121
Query 63 CGTTCCTCTAGTCAACCATTTCTTTCTCATCACTCCCAGTCCCAGGTAATCTCCAATTCA 122
||||| ||| || |||||||||||||||||||| | || ||||||||||||||||||
Sbjct 122 CGTTCGTCTCCTCGTCCATTTCTTTCTCATCACTCGCGGTTCCAGGTAATCTCCAATTCG 181
Query 123 ACTCGATCTTTCTCTTCTTTCCTCCATGGACGTATTGGAGTTGGAGCTTTGCAACAAAGA 182
|||||||||||||||||||||||||| | ||| || |||||| |||||||||||
Sbjct 182 ACTCGATCTTTCTCTTCTTTCCTCCACGAACG--TT----TTGGAG---TGCAACAAAGA 232
Query 183 CAGTGCCTTCTTGCCTTGCGATCGCCGTTGACGAGCTCTGTTAGCCGAAGCTTTTCATCT 242
||||| ||| |||||||||||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 233 CAGTGTCTTTTTGCCTTGCGATCGCCATTGGCGAGCTCTGTTAGCCGACGCTTTTCATCT 292
Query 243 GAGCCTGCGATTGAAGAGAAACCTT-CTGCTGAGACGGTTGTGATTGATGTTTTTAGCAG 301
||| ||||||| ||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct 293 GAGTCTGCGATAGAAGAGAAA-CTTCCTGCTGAGACTGTTGTGATTGATGTTTTTAGCAG 351
Query 302 ATTGAGTGCTAAGGATGATATTTGGAAAGAGCTGGATTCGAATGATGTTGTGATTAGCCA 361
||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 352 ATTGAATGGTAAGGATGAGATTACGAAAGAGCTGGATTCGAATGATGTTGTGATTAGCCA 411
Query 362 TGAATTAGCATTGAGAGTTCTGAGGGAACTTGAATCAAGCCCTGATGTTGCGGGAAGGTT 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 412 TGAATTAGCATTGAGAGTTCTGAGGGAACTTGAATCAAGCCCTGATGTTGCGGGGAGGTT 471
Query 422 TTTCAAGTGGGTTTTGGAGGCTTATCCTCGAAAACTCTCCTCCAAGAGTTATAACACGAT 481
|||||| |||| ||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 472 TTTCAAATGGGGTTTGGAGGCTTATCCTCAAAAACTTTCTTCCAAGAGTTATAACACGAT 531
Query 482 GCTGCGTATTCTTGGTGTTAATGGACTT-GTTGATGAATTTTGGGA-GTTGGTTGATGCT 539
|||||||||| |||||||||||||| || |||||||| |||| ||| ||||||||||| |
Sbjct 532 GCTGCGTATTTTTGGTGTTAATGGA-TTAGTTGATGAGTTTT-GGAGGTTGGTTGATGAT 589
Query 540 ATGAAGAAGAAAGGGCATGGTGTTTCAGCTAATGTTAGGGACAAAGTGGGTGACAAGTTT 599
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 590 ATGAAGAAGAAAGGGCATGGTGTTTCAGCTAATGTTAGGGACAGAGTCGGTGACAAGTTT 649
Query 600 CTGAAAGATGGACTGGAAAGTGATTTGGAGAGGCTTAAAGAGATTTTTGCTTCAGGTTCT 659
|||||||||||| |||| ||||||||||||||| |||||| | |||||||||||||||
Sbjct 650 AAGAAAGATGGACTAGAAAATGATTTGGAGAGGCTGAAAGAGCTATTTGCTTCAGGTTCT 709
Query 660 ATGGATAATTCGGTGGATAAGGTTTGCAATAGGGTGTGTAAGATTGTGATGAAGGAAGTG 719
|||||||| || || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 ATGGATAACTCTGTTGACAAGGTTTGCAATAGGGTGTGTAAGATTGTGATGAAGGAAGTG 769
Query 720 TGGAGTGCTGATGTGGAGAAACAGCTAAGGGATTTGAAGCTCGAGTTTAAAAGTGATCTG 779
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 770 TGGGGTGCTGATGTAGAGAAACAGCTAAGGGATTTGAAGCTCGAGTTTAAAAGTGATGTG 829
Query 780 GTGAAGATGGTATTGGAAAAACTTGACGTGGATCCGAGGAAAGCTTTATTGTTCTTTAGG 839
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 830 GTAAAGATGGTTTTGGAAAAACTTGACGTGGATCCGAGGAAAGCTTTGTTGTTCTTTAGG 889
Query 840 TGGATTGATGAGTCTGGCAGTTTTAAGCATGATGAGAAGACGTATAATGCTATGGCCAGG 899
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 890 TGGATTGATGAGTCTGGAAGTTTTAAACATGATGAGAAGACGTATAATGCTATGGCCAGG 949
Query 900 GTTTTAGGGAAAGAGAAGTTTCTTGATAGGTTTCAGCACATCATAGAGGAAATTAGGAGT 959
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 950 GTTTTAGGGAAAGAGAAGTTTCTTGATAGGTTTCAGCACATGATAGAAGAAATTAGGAGT 1009
Query 960 GCTGGCTACGAGATGGAAATGGAGACTTATGTTAGGGTTTCAGCAAGGTTCTGTCAGACT 1019
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GCTGGTTACGAGATGGAAATGGAGACTTATGTTAGGGTTTCAGCAAGGTTCTGTCAGACT 1069
Query 1020 AAAATGATTAAAGAAGCTGTTGAATTGTTCGAGTTTGCAATGGC-GG--G---TAGCAAC 1073
||||||||||||||||||||||| ||||| |||||||||||||| || | |||||||
Sbjct 1070 AAAATGATTAAAGAAGCTGTTGAGTTGTTTGAGTTTGCAATGGCAGGTAGCATTAGCAAC 1129
Query 1074 ACACCCACCCCACACTGCTGTAGTTTACTGCTCAAGAAAATTGTCACTGCCAAGAAATTG 1133
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1130 ACACCCACCCCACACTGCTGCAGTTTACTGCTCAAGAAAATTGTCACTGCAAAGAAATTG 1189
Query 1134 GACATGGACTTGTTTACAAGAACTGTGAAAGCTTATACTGGTAATGGCAACGTTGTGCCG 1193
||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1190 GACATGGACTTATTTACAAGAACTTTGAAAGCTTATACTGGGAATGGCAACGTTGTGCCG 1249
Query 1194 GAT-TCAATGCTGCAACATGTGCTCAAGTCTTTGAGAAGCGTTGATAGGTTTGGACAGAG 1252
||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GATGT-TATGCTGCAACATGTCCTCAAGTCTTTGAGAAGCGTTGATAGGTTTGGACAGAG 1308
Query 1253 CAATGAGGTGTTGAAAGCAATGAACGAAGGTGGTTATGTTCCTAGCGGTGATTTGCAGAG 1312
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1309 CAACGAGGTGTTGAAAGCGATGAACGAAGGTGGATATGTTCCTAGCGGTGATTTGCAGAG 1368
Query 1313 TGTGATTGCATCGGGACTTAGTCGTAAGGGGAAGAAAGATGAAGCAAACGAACTTGTGAA 1372
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1369 TGTGATTGCATCAGGACTTAGTCGTAAGGGCAAGAAAGATGAAGCAAACGAACTTGTGAA 1428
Query 1373 CTTTATGGAAGCCTCTGGAAATCATTTAGATGACAAAGCAATGGCATCTTTAGTTGAAGG 1432
|||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1429 CTTTATGGAAGCTTCTGGAAACCATTTAGATGATAAAGCAATGGCATCTTTAGTTGAAGG 1488
Query 1433 GCATTGTGATGCTAAAGATCTCGAAGAAGCTTCAGAGTGTTTCAAGAAGATGATTGGGAA 1492
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 GCACTGTGATGCTAAAGATCTCGAAGAAGCTTCAGAGTGTTTCAAGAAGATGATTGGGAA 1548
Query 1493 AGAGGGAGTCTCTTATGCAGGTTATGCATTTGAGAAGTTGGTACTTGCTTATTGCAACAG 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 AGAGGGAGTCTCTTATGCAGGTTATGCATTTGAGAAGTTGGTACTTGCTTATTGCAACAG 1608
Query 1553 TTTTCAGGCAAGAGATGTATACAAGCTTTTCACCGAGCTAGTGAAACAAAATCAGTTGAA 1612
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1609 TTTTCAGGCAAGAGATGTATACAAGCTTTTCAGTGAGCTAGTGAAACAAAATCAGTTGAA 1668
Query 1613 ACCTTGGCACAGTACATACAAAATCATGGTGAGGAATCTATTGATGAAGAAGGTAGCAAG 1672
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1669 ACCTTGGCACAGTACATACAAAATTATGGTGAGGAATCTGTTGATGAAGAAGGTAGCAAG 1728
Query 1673 AGATGGTGGGTTTGAAGAAGCTTTGAGTCTTCTACCTATGATGAGAAATCACGGGTTCCC 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 AGATGGTGGGTTTGAAGAAGCTTTGAGTCTTCTACCTATGATGAGAAATCACGGGTTCCC 1788
Query 1733 TCCTTTCGTGGACCCGTTCATGGATTACTTATCGAATAGTGGAACAAGCGCAGAGGCTTT 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 TCCTTTCGTGGACCCGTTCATGGATTACTTATCGAATAGTGGAACAAGCGCAGAGGCTTT 1848
Query 1793 CGCTTTTCTGAAGGCCGTGACTTCAAAGAAGTTTCCATCTAATTCAATGGTTCTGCGTGT 1852
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 CGCTTTTCTGAAGGCTGTGACTTCAAAGAAGTTTCCATCTAATTCAATGGTTCTGCGTGT 1908
Query 1853 ATTTGAAGCTATGTTGAAGTCTGCAAGGCATAGTGAAGCTCAGGATTTGCTGTCTATGTC 1912
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1909 ATTCGAAGCTATGTTGAAGTCTGCAAGGCATAGTGAAGCTCAGGATTTACTGTCTATGTC 1968
Query 1913 CCCAAGTTATATCCGTCGCAATGCAGAAGTTCTAGAACTTTTCAATTCCATGAAACCTGA 1972
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1969 CCCAAGTTATATCCGTCGCAATGCAGAAGTTCTAGAACTTTTCAATACCATGAAACCTGA 2028
Query 1973 TAAATGTTCCTTAGAGAAACCTTTGCCTGCTCCTGCTCAAATCGAAGCCTAATTCATTAT 2032
|||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2029 AAAATGTTCTTTAGAGAAACCTTTGCCTGCTCCTGCTCAAATTGAAGCTTAATTCATTAT 2088
Query 2033 A 2033
|
Sbjct 2089 A 2089
> AT5G15980.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:5213081-5215620 FORWARD LENGTH=2540
Length=2540
Score = 1432 bits (775), Expect = 0.0
Identities = 1488/1825 (82%), Gaps = 77/1825 (4%)
Strand=Plus/Plus
Query 228 CGAAGCTTTTCATCTGAGCCTGCGATTGAAGAGAAACCTTCTGCTGAGACGGTTGTGATT 287
|||||||| || || ||||||||| ||||||||||| ||||||||||| | ||||||
Sbjct 423 CGAAGCTTCTCGTCCGAGCCTGCGGTTGAAGAGAAATCTTCTGCTGAGGCTACCGTGATT 482
Query 288 GATGTTTTTAGCAGATTGAGTGCTAAGGATGATATTTGGAAAGAGCTGGATTCGAATGAT 347
||| ||||||| |||||||||| | ||||||| ||| |||| ||| |||| |||| || |
Sbjct 483 GATATTTTTAGTAGATTGAGTGGTGAGGATGAGATTAGGAAGGAGTTGGAATCGAGTGGT 542
Query 348 GTTGTGATTAGCCATGAATTAGCATTG-AGAGTTCTGAGGGAA-CTTGAATCAAGCCCTG 405
|| ||||||||||| || ||||| ||| || ||| ||| | || || ||||||| |||||
Sbjct 543 GTAGTGATTAGCCAAGATTTAGCTTTGAAG-GTTTTGA-GAAAGCTCGAATCAAACCCTG 600
Query 406 ATGTTGCGGGAAGGTTTTTCAAGTGGGTTTTGGAGGCTTATCCTCGA-AAACTCT-CCTC 463
||||||| ||| |||||| ||||| || |||||||| |||| || |||| | |||
Sbjct 601 ATGTTGCCAAAAGTTTTTTCCAGTGGATTAAGGAGGCTTCTCCT-GAGGAACT-TAGCTC 658
Query 464 CAAGAGTTATAACACGATGCTGCGTATTCTTGGTGTTAATGGACTTGTTGATGAATTTTG 523
|||| ||||||| ||||||||| ||||| |||| |||||||||||||||||| |||||
Sbjct 659 GAAGAACTATAACATGATGCTGCGGATTCTGGGTGGTAATGGACTTGTTGATGAGTTTTG 718
Query 524 GGAGTTGGTTGATGCT-ATGAAGAAGAAAGGGCATGGTGTT-TCAGCTAATGTTAGGGAC 581
|| ||||||||||| | ||||||||||||||||||||| || || ||||||||||| ||
Sbjct 719 GGGGTTGGTTGATG-TGATGAAGAAGAAAGGGCATGGT-TTATCGGCTAATGTTAGAGAT 776
Query 582 AAAGTGGGTGACAAGTTTCTGAAAGATGGACTGGAAAGTGATTTGGAGAGGCTTA-AAGA 640
|||||||||||||| |||| ||||||||| ||||| ||||||||| |||||| | || |
Sbjct 777 AAAGTGGGTGACAAATTTCAGAAAGATGGGCTGGAGAGTGATTTGCTGAGGCTGAGAA-A 835
Query 641 GATTTTTGCTTCAGGTTCTATGGATAATTCGGTGGATAAGGTTTGCAATAGGGTGTGTAA 700
| ||||| |||||| || | | |||||||||| ||| || |||||| |||||||||||||
Sbjct 836 GCTTTTTACTTCAGATTGTTTAGATAATTCGGCGGAGAATGTTTGCGATAGGGTGTGTAA 895
Query 701 GATTGTGATGAAGGAAGTGTGGAGTGCTGATGTGGAGAAACAGCTAAGGGATTTGAA-GC 759
||||||||||||||||| ||| ||| |||||| ||||||| | |||| |||||||| |
Sbjct 896 GATTGTGATGAAGGAAGAATGGGGTGATGATGTAGAGAAACGGGTAAGAGATTTGAATGT 955
Query 760 TCGAGTTTAAAAGTGATCTGGTGAAGATGGTAT-TGGAAAAACTTGACGTGGATCCGAGG 818
| |||||||| |||||| | ||||||||| | | ||||| ||||| || || || |||
Sbjct 956 T-GAGTTTAAGAGTGATTTAGTGAAGATGAT-TGTGGAACGTCTTGATGTTGAACCCAGG 1013
Query 819 AAAGCTTTATTGTTCTTTAGGTGGATTGATGAGTCTGG-CAGTTTTAAGCATGATGAGAA 877
|||||||| |||||||| |||||||||||||||||| | ||| ||||||||||||||
Sbjct 1014 AAAGCTTTGTTGTTCTTCCGGTGGATTGATGAGTCTGATCTCTTT-AAGCATGATGAGAA 1072
Query 878 GACGTATAATGCTATGGCCAGGGTTTTAGGGAAA-GAGAAGTTTCTTGATAGGTTTCAGC 936
|| |||||||||||||| |||||||| |||||| ||||||||||||||||| ||||||
Sbjct 1073 AACCTATAATGCTATGGCTAGGGTTTT-GGGAAAAGAGAAGTTTCTTGATAGATTTCAGA 1131
Query 937 ACATCATAG-AGGAAATTAGGAGTGCTGGCTACGA-GATGGAAATGGAGACTTATGTTAG 994
|||| ||| || |||| ||||||||||| || || | ||||||| ||||||||||||||
Sbjct 1132 ACATTGTAGTAG-AAATGAGGAGTGCTGGTTATGAAG-TGGAAATAGAGACTTATGTTAG 1189
Query 995 GGTTTCAGCAAGGTTCTGTCAGACTAAAATGATTAAAGAAGCTGTTGAATTGTTCGAGTT 1054
|||||| | |||||||| ||||||||| |||| || ||||||||||| ||||| ||| |
Sbjct 1190 AGTTTCAACGAGGTTCTGCCAGACTAAATTGATCAAGGAAGCTGTTGACTTGTTTGAGAT 1249
Query 1055 TGCAATGGC-GG--GTAGCA--AC-A-CA-CCC-ACCCCACACTGCTG-TAGTTTACTGC 1104
||||||||| || |||| | | | || ||| ||||||||||||| | |||| |||
Sbjct 1250 TGCAATGGCAGGTAGTAGTAGTAGTAACAACCCCACCCCACACTGCTTCT-GTTTGTTGC 1308
Query 1105 TCAAGAAAATTGTCACTGCCAAGAAAT-TGGACATGGACTTGTTTACAAGAACTGTGAAA 1163
|||||||||||||||||||||||| | | || ||||| |||||| ||||| ||||||||
Sbjct 1309 TCAAGAAAATTGTCACTGCCAAGAT-TCTAGATATGGATTTGTTTTCAAGAGCTGTGAAA 1367
Query 1164 GCTTATACTGGTAATGGCAACG-TTGTGCCGGATTCAATGCTGCAA-CATGTGCTCAA-G 1220
| |||||| ||||| || | || || ||||||| ||||| || | ||| || || |
Sbjct 1368 GTTTATACCAAAAATGGTAATGCTT-TGACGGATTCCTTGCTGAAATC-TGT-CTTAAAG 1424
Query 1221 TCTTTGAGAAGCGTTGATAGGTTTGGACAGAGCAATGAGGTGTTGAAAGCAATGAACGA- 1279
|| ||||||||||| |||||| ||| ||||||||||||| ||||||||| |||||| ||
Sbjct 1425 TCCTTGAGAAGCGTGGATAGGGTTGAACAGAGCAATGAGCTGTTGAAAGAAATGAA-GAG 1483
Query 1280 AGGTGGTTATGTTCCTAGCGGTGATTTGCAGAGTGTGATTGCATCGGGACTTAGTCGTAA 1339
||| || ||||||||||| |||||| ||||||| |||||||||| | |||||||||||
Sbjct 1484 AGGAGGCTATGTTCCTAGTGGTGATATGCAGAGCATGATTGCATCAAGTCTTAGTCGTAA 1543
Query 1340 GGGGAAGAAAGATGAAGCAAACGAACTTGT-GAACTTTATGGAAGCCTCTGGAAATCATT 1398
||| ||||| || ||||| | ||| |||| || |||||||||| | || ||||| || |
Sbjct 1544 GGGAAAGAAGGACGAAGCTGATGAATTTGTAGA-CTTTATGGAATCATCCGGAAA-CAAT 1601
Query 1399 -TAGATGACAAAGCAATGGCATCT-TTAGTTGAAGGGCATTGTGATGCTAAAGA-TCTCG 1455
|||||||||| |||||||| ||| || ||||||||| |||||||| | || ||| |
Sbjct 1602 CTAGATGACAAGGCAATGGCGTCTCTT-GTTGAAGGGTATTGTGATTCCGG-GAATCTTG 1659
Query 1456 AAGAAGCTTCAGAGTGTTTCAAGAAGATGATTGGGAAAGA-GGGAGTCTCTTATGCAGGT 1514
| ||||||| || ||||||| |||| ||| |||| ||| | ||||||||| ||||| | |
Sbjct 1660 ATGAAGCTTTAGTGTGTTTCGAGAAAATGGTTGG-AAACACGGGAGTCTCCTATGCTGAT 1718
Query 1515 TATGCATTTGAGAAGTTGGTACTTGCTTATTGCAACA-GTTTTCAGGCAAGAGATGTATA 1573
||| |||||||||||||||| |||||||||||||||| | | || | |||||||| |||
Sbjct 1719 TATTCATTTGAGAAGTTGGTTCTTGCTTATTGCAACAAGAAT-CAAGTAAGAGATGCATA 1777
Query 1574 CAAGCTTTTCACCG-AGCTAGTGAAAC-AAAA-TCAGTTGAAACCTTGGCACAGTACATA 1630
||||||||| | | | | ||| || | |||| ||| |||||||| | || || |||||
Sbjct 1778 CAAGCTTTTGAGTGCA-CAAGT-AA-CGAAAAATCAACTGAAACCTCGTCATAGCACATA 1834
Query 1631 CAAAATCATGGTGAGGAATCTATTGATGAAGAAGGTAGCAAGAGATGGTGGGTTTGAAGA 1690
||||| | |||||| |||||| |||| ||||||| | ||||| |||||||||||||||||
Sbjct 1835 CAAAAGCTTGGTGACGAATCTGTTGACGAAGAAGATTGCAAGGGATGGTGGGTTTGAAGA 1894
Query 1691 AGCTTTGAGTCTTCTACCTATGATGAGAA-ATCACGGGTTCCCTCCTTTCGTGGACCCGT 1749
|||||||||||||||||| || |||| || |||||||||||||||||||| | ||||| |
Sbjct 1895 AGCTTTGAGTCTTCTACCGATAATGA-AAGATCACGGGTTCCCTCCTTTCATTGACCCTT 1953
Query 1750 TCATG-GATTACTTATCGAAT-AG-TGGAACAAGCGCAGAGGCTTTCGCTTTTCTGAAGG 1806
||||| | |||||| || | | | ||||| |||| | || ||| ||| |||| ||||||
Sbjct 1954 TCATGAG-TTACTTCTC-A-TCAACTGGAAAAAGCACTGAAGCTCTCGGTTTTTTGAAGG 2010
Query 1807 CCGTGACTTCAAAGAAGTTTCCATCTA-ATTCAATGGTTCTGCGTGTATTTGAAGCTATG 1865
| |||| || || || ||||||| || || || |||||||||||||||| ||| |||||
Sbjct 2011 CTATGACCTCGAATAACTTTCCATATATAT-CAGTGGTTCTGCGTGTATTCGAAACTATG 2069
Query 1866 TTGAAGTCTGCAAGGCATAGTGAAGCTCAGGATTTGCTGTCTATGTCCCCAAGTTATATC 1925
||||||||||||| || |||||||| || ||||| || ||| ||| ||||| ||||||
Sbjct 2070 ATGAAGTCTGCAAGACACAGTGAAGCACAAGATTTACTCTCTCTGTGCCCAAACTATATC 2129
Query 1926 CGTCGCAATGCAGAAGTTCTAGAACTTTTCAATTCCATGAAACCTGATAAATGTTCCT-T 1984
||| ||| | || ||||||||||| |||||| |||||||||| | ||| | | | |
Sbjct 2130 CGTAATAATCCGGATGTTCTAGAACTCTTCAATACCATGAAACCCAACGAATCTGC-TGT 2188
Query 1985 AGAGAAACCTTTGCCTGCTCCTGCT 2009
||| ||||||||| ||||| |||||
Sbjct 2189 AGAAAAACCTTTGGCTGCTTCTGCT 2213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101304699810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5