BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927733

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G34440.1 | Symbols:  | Protein kinase superfamily protein | ...   846    0.0  


> AT4G34440.1 | Symbols:  | Protein kinase superfamily protein 
| chr4:16465828-16468956 FORWARD LENGTH=2317
Length=2317

 Score =  846 bits (458),  Expect = 0.0
 Identities = 514/541 (95%), Gaps = 3/541 (1%)
 Strand=Plus/Plus

Query  80    GGAAAGTTATCCGACAAATCCGATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATA  139
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1555  GGAAAGTTATCCGACAAATCTGATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATA  1614

Query  140   ACCGGACA-ACCTCCAGTGGATCTAACTGGAGAAATGGAATATAGCTTGGTAGACTGGGC  198
             |||||| | ||||||  ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct  1615  ACCGGA-AGACCTCCTCTGGATCTAACTGGAGAAATGGAAGATAGCTTGGTAGATTGGGC  1673

Query  199   AAGGCCTTTGTGTTTGAAAGCAGCTCAAGATGGTGATTACAACCAATTGGCAGATCTGCG  258
             ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||
Sbjct  1674  AAGGCCTTTGTGTTTGAAAGCAGCTCAAGATGGAGATTACAACCAATTGGCTGATCCACG  1733

Query  259   TCTAGAGCTAAACTACAATCATCAAGAGATGGTTCAAATGGCTTCTTGTGCAGCTGCAGC  318
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1734  TCTAGAGCTAAACTACAGTCATCAAGAGATGGTTCAAATGGCTTCTTGTGCAGCTGCAGC  1793

Query  319   AATCAGACACTCAACAAGAAGACGGCCTAAGATGAGCCAGATTGTACGAGCACTAGAAGG  378
             ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1794  AATCAGACATTCAGCAAGAAGACGGCCTAAGATGAGCCAGATTGTACGAGCACTAGAAGG  1853

Query  379   AGATATGTCAATGGATGATCTAAGTGAAGGAACAAGACCAGGACAAAGCAAGTATTTGAG  438
             ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct  1854  AGATATGTCAATGGATGATCTAAGTGAGGGAACAAGACCAGGACAAAGCACGTACTTGAG  1913

Query  439   GCCCGGAAGCGTGAGCTCAGAGTATAACGCAAGCTCGTACACCGCAGACATGAAAAAATT  498
              ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| ||
Sbjct  1914  CCCCGGGAGCGTGAGCTCAGAGTATGACGCAAGCTCGTACACGGCAGACATGAAAAAGTT  1973

Query  499   CAAGAAATTGGCGTTAGAGAATAAAGAATATCAAAGCAGTGAATATGGTGGAACAAGTGA  558
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1974  CAAGAAACTGGCGTTAGAGAATAAAGAATATCAAAGCAGTGAATATGGTGGAACAAGTGA  2033

Query  559   GTATGGTTTAAATCCT-CTGCTTCAAGTAGTGAAGAAATGAATAGAGGTTCAATGAAACG  617
             |||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct  2034  GTATGGCTTAAACCCTTCTGCTTCAAGTAGTGAAGAAATGAATAGAGGCTCAATGAAACG  2093

Query  618   C  618
             |
Sbjct  2094  C  2094



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29788849171


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5