BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927734
Length=317
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02493.1 | Symbols: RTFL19, DVL2 | ROTUNDIFOLIA like 19 | ch... 316 6e-86
> AT3G02493.1 | Symbols: RTFL19, DVL2 | ROTUNDIFOLIA like 19 |
chr3:515944-516358 REVERSE LENGTH=415
Length=415
Score = 316 bits (171), Expect = 6e-86
Identities = 201/215 (93%), Gaps = 3/215 (1%)
Strand=Plus/Plus
Query 103 ATTTGCTATACAAGCATTGTTATATCAACTGGTTTCTTATGGACACAACTGGATATGGAA 162
|||| | |||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 ATTTCCGATACAATCATTGTTATATCAACTGGTTTCTTAGGGACACAACTGGATATGGAA 180
Query 163 AGCATCATCATGAGCTTGAGGAGAAAGGAGAAGAAATCACAAAGTAGAAGACTCGGGAAA 222
|| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 181 AG---CATCATGAGCTTGAAGAGAAAGGAGAAGAAATCCCAAAGTAGAAGACTCGGGAAA 237
Query 223 TATCTCAAAGAACAAAAGGGGAGGATCTACATCATTAGAAGATGTGTGATGATGCTTCTT 282
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 TATCTGAAAGAACAAAAGGGGAGGATCTACATCATTAGAAGATGTGTGATGATGCTCCTT 297
Query 283 TGTTCATGTGATTAATTTATTTATTACGATACACA 317
||||| |||||||||||||||||||||||||||
Sbjct 298 TGTTCGCATGATTAATTTATTTATTACGATACACA 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14728450457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5