BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927738
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02510.1 | Symbols: | Regulator of chromosome condensation ... 2034 0.0
> AT3G02510.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr3:521794-524631 REVERSE LENGTH=1569
Length=1569
Score = 2034 bits (1101), Expect = 0.0
Identities = 1189/1231 (97%), Gaps = 7/1231 (1%)
Strand=Plus/Plus
Query 1 ctct-ctctttctttctctctctctGATGGTTTCAGCTACTTCAATCATAGCCTGGGGCT 59
|||| |||| ||||||||| | ||| |||||| |||||||||||||||||||||||||||
Sbjct 70 CTCTCCTCTCTCTTTCTCTGTGTCTAATGGTTACAGCTACTTCAATCATAGCCTGGGGCT 129
Query 60 CTGGAGAAGATGGGCAACTAGGAATTGGTACCAACGAAGAAAAGGAATGGGCTTGCGTCG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CTGGAGAAGATGGGCAACTAGGAATTGGTACCAACGAAGAAAAGGAATGGGCTTGCGTCG 189
Query 120 TTGAAGCTCTCGAGCCTTACTCTGTTCGCTCTGTTGTCTCTGGTAGCCGTAACTCCCTCG 179
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 190 TTGAAGCTCTCGAGCCTTACTCTGTTCGCTCCGTTGTCTCTGGTAGCCGTAACTCCCTCG 249
Query 180 CCATTTGCGACGATGGCACGATGTTTACATGGGGTTGGAATCAAAGAGGTACATTAGGAC 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CCATTTGCGATGATGGCACGATGTTTACATGGGGTTGGAATCAAAGAGGTACATTAGGAC 309
Query 240 ACCCGCCAGAAACAAAAACAGAGAACATCCCCAGTCGAGTTAAGGCCCTTGCCAAAGTCA 299
||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 310 ACCAACCAGAAACAAAAACAGAGAACATCCCTAGTCGAGTCAAGGCCCTTGCCAATGTCA 369
Query 300 AGATTACTCAGGCAGCAATTGGTGGTTGGCATTGTTTAGCTGTTGATGATCAAGGCCGAG 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 AGATCACTCAGGCAGCAATTGGTGGTTGGCATTGTTTAGCTGTTGATGATCAAGGCCGAG 429
Query 360 CATATGCGTGGGGTGGGAATGAATATGGACAATGTGGTGAAGAGCCTTTAAAGGACGAGA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 430 CATATGCGTGGGGTGGGAATGAATATGGACAATGTGGTGAAGAGCCTTTAAAAGACGAGA 489
Query 420 TGGGTAGGCCCGTGCGAAGAGATATTGTGATCCCTAAGCGTTGTGCCCCGAAACTTACAG 479
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 490 TGGGTAGGCCCGTACGAAGAGATATTGTGATCCCTAAGCGTTGTGCCCCCAAACTTACAG 549
Query 480 TTC-GACAGGTAGCTGCAGGTGGTACTCACTCGGTGGTT-TTGACACGCGAAGGTCATGT 537
| | ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 550 T-CAGACAGGTAGCTGCAGGTGGTACTCACTCGGTGGTTCTT-ACACGCGAAGGTCATGT 607
Query 538 GTGGACTTGGGGTCAACCGTGGCCCCCCGGTGACATAAAACAAATATTTGTTCCTGTAAG 597
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 608 GTGGACTTGGGGTCAACCGTGGCCTCCCGGTGACATAAAACAAATATCTGTTCCTGTAAG 667
Query 598 AGTTCAAGGTCTTGAAAATGTCTGTCTTATCGCTGTTGGAGCATTTCATAATCTGGCTCT 657
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 668 AGTTCAAGGTCTTGAAAATGTCCGTCTTATTGCTGTTGGAGCATTTCATAATCTGGCTCT 727
Query 658 TGAAGAAGATGGCAGATTATTGGCATGGGGTAATAACGAATACGGGCAACTTGGAACCGG 717
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 728 TGAAGAAGATGGGAGATTATTGGCATGGGGTAATAACGAATACGGACAACTTGGAACCGG 787
Query 718 TGACACCCAGCCAACATCTCATCCTGTTCCAGTCCAAGGCCTCGATGATCTCACTTTGGT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TGACACCCAGCCAACATCTCATCCTGTTCCAGTCCAAGGCCTCGATGATCTCACTTTGGT 847
Query 778 TGATATTGCTGCGGGTGGATGGCATTCAACGGCTTTAACTGATAAAGGAGAGGTGTATGG 837
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 848 CGATATTGCTGCGGGTGGATGGCATTCAACGGCTCTAACTGATAAAGGAGAGGTGTATGG 907
Query 838 GTGGGGAAGAGGAGAACACGGAAGACTCGGGTTTGGTGACAATGACAAGAGCAGCAAAAT 897
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 908 TTGGGGAAGAGGAGAACATGGAAGACTCGGGCTTGGTGACAATGACAAGAGCAGCAAAAT 967
Query 898 GGTTCCACAGAAAGTTAATCTTCTAGCTGAAGAAGATATAATTCAGGTTTCTTGTGGTGG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 968 GGTTCCACAGAAAGTTAATCTTCTAGCTGAAGAAGATATAATTCAGGTTTCTTGTGGCGG 1027
Query 958 AACACATTCAGTTGCTTTGACAAGAGATGGCAGAATCTTCTCGTTTGGTAGAGGAGATCA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 AACACATTCAGTTGCTTTGACAAGAGATGGCAGAATCTTCTCGTTTGGTAGAGGAGATCA 1087
Query 1018 TGGTAGACTTGGTTATGGAAGGAAAGTAACCACAGGACAGCCATTGGAGTTACCTATAAT 1077
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1088 TGGTAGACTTGGTTATGGAAGGAAAGTAACAACAGGACAGCCATTGGAGTTGCCTATAAA 1147
Query 1078 GATTCCTCCGCCTGAAGGAAGCTTTAATCACGCAGACGAAGAAGAAGAAGGAAAATGGTC 1137
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1148 GATTCCTCCGCCTGAAGGAAGCTTTAATCACACAGACGAAGAAGAAGAAGGAAAATGGTC 1207
Query 1138 AGCTAAATCGATTGCTTGCGGTGGCCGACACACTCTTGCCATTGTAGAATGGAAGTCCGA 1197
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1208 AGCTAAATCGATTGCTTGCGGTGGCCGCCACACTCTTGCCATTGTAGAATGGAAGTCCGA 1267
Query 1198 TGATATCTGATC-CTCAATCTCACTGGGCAC 1227
|||||| ||| | |||||||||||||| |||
Sbjct 1268 TGATATTTGA-CACTCAATCTCACTGGTCAC 1297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5