BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927748
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02590.1 | Symbols: | Fatty acid hydroxylase superfamily pr... 730 0.0
AT3G02580.1 | Symbols: STE1, DWF7, BUL1 | sterol 1 | chr3:54690... 468 4e-131
> AT3G02590.1 | Symbols: | Fatty acid hydroxylase superfamily
protein | chr3:549340-550553 FORWARD LENGTH=840
Length=840
Score = 730 bits (395), Expect = 0.0
Identities = 497/547 (91%), Gaps = 4/547 (1%)
Strand=Plus/Plus
Query 166 ACAGTCTTCTTCCAGCTGTATCTGAGTATATGATCGAGCATGGTTGGACCCAATGTTACT 225
||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 296 ACACTCTTCTTCCAGCTGTCTCTGAGTATATGATCGAGCATGGTTGGACCAAATGTTACT 355
Query 226 CTACAATTGACCATTTCAACTGGTTCCACTGTATCCTCTACATAACTCTCTATCTTGCTT 285
||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||||| ||
Sbjct 356 CTACACTTGACCATTTCAACTGGTTCCTCTGTTTCCTCTACATAGCTCTCTATCTTGTTT 415
Query 286 TAGTTGAGTTTGGGGTTTATTGGATTCACAAAGAGCTTCATGACAATAAATTTCTCTATA 345
||||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 416 TAGTTGAGTTTATGATTTATTGGGTTCACAAAGAGCTTCATGACATTAAATTTCTCTATA 475
Query 346 AGCATCTCCATGCGACCCGTCACATCTACAACAAGCAAAACACAATCTCTCCATTTGCTG 405
||||||||||||| |||| ||| || |||||||||||||||||| ||||||||||||| |
Sbjct 476 AGCATCTCCATGCTACCCATCATATGTACAACAAGCAAAACACACTCTCTCCATTTGCCG 535
Query 406 GGTTCGCATTCCATCCGTTGGACGGGATAATTCAGTCTTTACCGCATGTGATAGCGCTGT 465
|| |||||||||||||| ||||||||||| ||||| || ||||||| |||||||||||||
Sbjct 536 GGCTCGCATTCCATCCGCTGGACGGGATACTTCAGGCTATACCGCACGTGATAGCGCTGT 595
Query 466 TTATAGTGCCGATTCATCTCATAACACATCTGTGCCTTTTGTCTTCGGAAGGGATATGGA 525
|||||||||||||||||||||||||||||||| | ||||||| || ||||||||||||||
Sbjct 596 TTATAGTGCCGATTCATCTCATAACACATCTGAGTCTTTTGTTTTTGGAAGGGATATGGA 655
Query 526 CAGCAAACATCCATGACTGCATCCACGGCAACATCTGGCC-AGTAATGGGTGCAGGATAC 584
|||||| ||||||||| ||||| || || ||||||||||| | |||||||||||||||||
Sbjct 656 CAGCAAGCATCCATGATTGCATACATGGTAACATCTGGCCTA-TAATGGGTGCAGGATAC 714
Query 585 CATACGATACACCACACCACATACAAGCATAACTATGGCCACAAAACCATATTGATGGAT 644
||||| |||||||| || |||||||||||||||||||| || | ||||||| ||||||
Sbjct 715 CATACCATACACCATACAACATACAAGCATAACTATGGTCATTATACCATATGGATGGAC 774
Query 645 TGGATGTTTGGCTCTCTTAAGGCTTC-TTTAGCAGAAGAAGACAGTTTCAAGGAGAAAGC 703
||||||||||||||||||| || ||| |||||||||| |||||||||||||||||||||
Sbjct 775 TGGATGTTTGGCTCTCTTATGG-TTCCTTTAGCAGAAAAAGACAGTTTCAAGGAGAAAGA 833
Query 704 AAAGTGA 710
|||||||
Sbjct 834 AAAGTGA 840
Score = 202 bits (109), Expect = 4e-51
Identities = 134/145 (92%), Gaps = 5/145 (3%)
Strand=Plus/Plus
Query 24 ATGGCGGCGACTAGT-GCAGATTAT-A--ATCAGTTCGTCAATGAGACCTCTTTTTACAA 79
||||||||||||| | ||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 1 ATGGCGGCGACTA-TGGCAGATTATAATGATCAGATCGTCAATGAGACCTCTTTTTACAA 59
Query 80 CCGTATGGTTCTGAGTCACCTTTTGCCGGCGAGTCTATGGGAACCTTTACCACATTTCCT 139
||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 60 CCGAATGGTTCTGAGTCACCTTTTGCCGGTGAATCTATGGGAACCTTTACCACATTTCCT 119
Query 140 TCAGACATGGCTCAGGAACTACCTC 164
|||||||||||| |||||||||||
Sbjct 120 CCAGACATGGCTCCGGAACTACCTC 144
> AT3G02580.1 | Symbols: STE1, DWF7, BUL1 | sterol 1 | chr3:546903-548795
FORWARD LENGTH=1171
Length=1171
Score = 468 bits (253), Expect = 4e-131
Identities = 446/536 (83%), Gaps = 25/536 (5%)
Strand=Plus/Plus
Query 166 ACAGTCTTCTTCCAGCTGTATCTGAGTA-TATGATCGAGCATGGTTGGACCCAATGTTAC 224
||| |||||||||| |||| || ||| | |||||| || | |||||||||| ||||||
Sbjct 438 ACACTCTTCTTCCAACTGTCTCCGAG-AGTATGATTGAACGTGGTTGGACCAAATGTT-T 495
Query 225 T-CTA-CAATTGACCATTTCAACTGG-TTCCACTGTA--TCCTCTACATAACTC-TCTAT 278
| ||| | || | | | ||| |||| || ||||| | | ||||| | | |||||
Sbjct 496 TGCTAGC-ATAGGCGAATTCGGCTGGATT---CTGTATTTTGTTTACATCGC-CATCTAT 550
Query 279 CTTGCTTTAGTTGAGTTTGGGGTTTATTGGATTCACAAAGAGCTTCATGACAATAAATTT 338
|||| ||| ||||||||||| |||||||||| |||| |||||||||||||| ||| |
Sbjct 551 CTTGTTTTCGTTGAGTTTGGTATTTATTGGATGCACAGAGAGCTTCATGACATTAAGCCT 610
Query 339 CTCTATAAGCATCTCCATGCGACCCGTCACATCTACAACAAGCAAAACACAATCTCTCCA 398
||||||||| |||||||||| |||| ||| |||||||||||||| || ||| ||||||||
Sbjct 611 CTCTATAAGTATCTCCATGCCACCCATCATATCTACAACAAGCAGAATACACTCTCTCCA 670
Query 399 TTTGCTGGG-TTCGCATTCCATCC-GTTGGACGGGATAATTCAGTCTTTACCGCATGTGA 456
||||| ||| || ||||| || || | | ||||||||| ||||| || ||||||||||||
Sbjct 671 TTTGCCGGGCTT-GCATTTCACCCAG-TAGACGGGATACTTCAGGCTGTACCGCATGTGA 728
Query 457 TAGCGCTGTTTATAGTGCCGATTCATCTCATAACACATCT-GTGCCTTTTG-TCTTCGGA 514
||||||||||||||||||| |||||| ||| ||| ||| | | | |||||| || | |||
Sbjct 729 TAGCGCTGTTTATAGTGCCAATTCATTTCACAACTCATATAG-GTCTTTTGTTCAT-GGA 786
Query 515 AGGGATATGGACAGCAAACATCCATGACTGCATCCACGGCAACATCTGGCCAGTAATGGG 574
|| ||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 787 AGCGATATGGACGGCGAACATCCATGACTGCATCCATGGCAACATCTGGCCAGTAATGGG 846
Query 575 TGCAGGATACCATACGATACACCACACCACATACAAGCATAACTATGGCCACAAAACCAT 634
||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||
Sbjct 847 TGCAGGATACCATACGATACACCACACGACATACAAGCATAACTATGGTCATTATACCAT 906
Query 635 ATTGATGGATTGGATGTTTGGCTCTCTTAAGGCT--TCT-TTAGCAGAAGAAGACA 687
|| |||||||||||||||||||||||||| || | ||| |||| |||||| ||||
Sbjct 907 ATGGATGGATTGGATGTTTGGCTCTCTTAGGGATCCTCTCTTAGAAGAAGATGACA 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5