BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927762
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02720.1 | Symbols: | Class I glutamine amidotransferase-li... 2004 0.0
> AT3G02720.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr3:586224-588365 FORWARD LENGTH=1556
Length=1556
Score = 2004 bits (1085), Expect = 0.0
Identities = 1173/1216 (96%), Gaps = 4/1216 (0%)
Strand=Plus/Plus
Query 2 ctctct-c-tctctc-tctctctTGCTGAAAAATGGCGAACTCGAGAACTGTTTTAATCT 58
|||||| | ||| || |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 82 CTCTCTCCATCT-TCATCTCTCTTGCTGAAAAATGGCGAACTCGAGAACTGTCTTAATCT 140
Query 59 TGTGCGGTGACTACATGGAAGACTACGAGGTAATGGTCCCGTTCCAAGCTTTGCAAGCTT 118
||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 141 TGTGCGGTGACTACATGGAAGACTACGAGGTGATGGTTCCGTTCCAAGCTTTACAAGCTT 200
Query 119 TCGGAGTCTCCGTCCACACCGTCTGTCCCGGAAAGAAAGCTGGCGACTCTTGCCCCACCG 178
||||| || |||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 201 TCGGAATCACCGTCCACACCGTCTGCCCCGGAAAGAAAGCTGGTGACTCTTGCCCCACCG 260
Query 179 CCGTTCACGATTTCTGTGGCCACCAGACATATTCTGAGTCACGAGGTCACAATTTCACGC 238
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 261 CCGTTCACGATTTTTGTGGCCACCAGACATATTTTGAGTCACGAGGTCACAATTTCACGC 320
Query 239 TCAATGCAACTTTTGATGAAGTTGATCTTAGCAAGTATGATGGATTGGTTATACCAGGAG 298
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 321 TCAATGCAACGTTTGATGAAGTTGACCTTAGCAAGTATGATGGATTGGTTATACCAGGAG 380
Query 299 GACGTGCTCCAGAATACCTGGCATTGACTGCATCTGTTGTTGAGCTGGTTAAAGAGTTCT 358
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 381 GACGTGCTCCAGAATACCTGGCCTTGACTGCATCTGTTGTTGAGCTGGTTAAAGAGTTCT 440
Query 359 CAAGTTCTGGCAAGCCCATCGCCTCTATTTGCCATGGGCAGTTGATATTGGCAGCTGCAG 418
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CAAGATCTGGCAAGCCCATTGCCTCTATTTGCCATGGGCAGTTGATATTGGCAGCTGCAG 500
Query 419 ACGCAGTCAATGGTCGAAAGTGCACAGCTTATGCAACTGTTGGACCTGCCCTTATTGCTG 478
|| |||||||||||||||| || |||||||||||||||||||||||| ||||| ||||||
Sbjct 501 ACACAGTCAATGGTCGAAAATGTACAGCTTATGCAACTGTTGGACCTTCCCTTGTTGCTG 560
Query 479 CAGGTGCTAAGTGGATCGAACCGATAACGCCGGATGTTTGTGTTGTTGATGGTAGTTTGA 538
||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 561 CAGGTGCCAAGTGGGTCGAACCGATAACTCCGGATGTCTGTGTTGTTGATGGTAGTTTGA 620
Query 539 TTACTGCAGCTACATATGAGGGTCATCCTGAATTTATCCAGCTTTTTGTCAAGGCTCTGG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 621 TTACTGCAGCTACATATGAGGGTCATCCTGAATTTATCCAGCTTTTTGTCAAGGCTCTTG 680
Query 599 GCGGTAAAATAACTGGAGCAAATAAAAGGATCTTGTTTCTTTGTGGGGATTATATGGAAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GCGGTAAAATAACTGGAGCAAATAAAAGGATCTTGTTTCTTTGTGGGGATTATATGGAAG 740
Query 659 ACTATGAAGTCAAAGTCCCTTTCCAGTCCCTTCAAGCTTTGGGATGTCAAGTTGATGCGG 718
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACTATGAAGTCAAAGTGCCTTTCCAGTCCCTTCAAGCTTTGGGATGTCAAGTTGATGCGG 800
Query 719 TTTGTCCAGAGAAGAAGGCTGGTGATCGCTGCCCAACTGCAATCCATGACTTTGAGGGTG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TTTGTCCAGAGAAGAAGGCTGGTGATCGCTGCCCAACTGCAATCCATGACTTTGAGGGTG 860
Query 779 ACCAAACTTACAGTGAGAAACCAGGCCACACTTTTGCTTTAACTACTAACTTTGATGGCC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 861 ACCAAACTTACAGTGAGAAACCAGGCCACACTTTTGCTTTAACTACTAACTTTGATGACC 920
Query 839 TAGTTTCCTCGAGTTATGATGCTCTGGTCATTCCTGGAGGCAGAGCACCAGAATATCTGG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 TAGTTTCCTCGAGTTATGATGCTCTGGTCATTCCTGGAGGCAGAGCACCAGAATATCTGG 980
Query 899 CCTTGAACGAACATGTCCTTAACATAGTTAAAGAGTTCATGAATTCTGAGAAACCAGTTG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CCTTGAACGAACATGTCCTTAACATAGTTAAAGAGTTCATGAATTCTGAGAAACCAGTTG 1040
Query 959 CATCTATTTGCCACGGACAACAGATCTTAGCTGCTGCTGGTGTCCTCAAGGGAAGGAAAT 1018
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 CGTCTATTTGCCACGGACAACAGATCTTAGCTGCTGCTGGTGTCCTCAAGGGAAGGAAAT 1100
Query 1019 GCACTGCTTATCCAGCCGTGAAACTGAACGTGGTACTTGGAGGAGGAACTTGGCTAGAAC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 GCACTGCTTATCCAGCCGTGAAACTGAACGTGGTACTTGGAGGAGGAACTTGGCTAGAAC 1160
Query 1079 CAGATCCAATCCACCGATGCTTCACTGACGGAAATCTGGTAACTGGCGCAGCATGGCCAG 1138
||||||||||| || | |||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 1161 CAGATCCAATCGACAGGTGCTTCACTGACGGGAATCTAGTAACTGGCGCAGCATGGCCTG 1220
Query 1139 GACACCCAGAGTTTGTGTCACAGCTAATGGCTTTGTTGGGCATTCAGGTCTCATTCTAAG 1198
||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1221 GACACCCGGAGTTTGTTTCACAACTAATGGCTTTGTTGGGCATTCAGGTTTCATTCTAAG 1280
Query 1199 TTCCATGTTATGAAAA 1214
|||||||||||| |||
Sbjct 1281 TTCCATGTTATGTAAA 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5