BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927772
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02820.1 | Symbols: | zinc knuckle (CCHC-type) family prote... 1349 0.0
> AT3G02820.1 | Symbols: | zinc knuckle (CCHC-type) family protein
| chr3:611524-613448 FORWARD LENGTH=1052
Length=1052
Score = 1349 bits (730), Expect = 0.0
Identities = 849/904 (94%), Gaps = 17/904 (2%)
Strand=Plus/Plus
Query 1 ATCCAAGGGTGAAATCTGAAATGGAATCAGCTCCGACGGGATGTTTCAAATGTGGCCGTC 60
||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 30 ATCGAAGAGTGAAATCTGAAATGGAATCAGCTCCGACGGGATGCTTCAAGTGTGGTCGTC 89
Query 61 CCGGTCACTGGTCTCGCGATTGTCCATCGTCGGCTCCGGTCGCCGGCAATAATTCCGTTT 120
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 90 CCGGTCATTGGTCTCGTGATTGTCCATCATCGGCTCCGGTCGCCGGCAATAATTCCGTTT 149
Query 121 CGTCTTCTTCCGGTCCATCTCAAACCCCTAATAATGAATTTCAGAGATCCTCCAATAAAA 180
| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 150 CTTCTTCTTCCGCTCCATCTCAAATCCCTAATAATGAATTTCAGAGATCCTCCAGTAAAA 209
Query 181 GTGGAATTCCTGCCGCCGGAACCTCCATAGCTCCTGTTCCTAAAGTGACGAAGACGAGAG 240
|||||| ||| | | |||||||||| |||||||||||||||||||||||
Sbjct 210 GTGGAA--CCT-----C---A-----ATAGCTCCTGCTCCTAAAGTGACGAAGACGAGAG 254
Query 241 TCCAAAGGCCCAAGCTAACTCCTGAATTGTTACTCTCTGAGGATGGTCTCGGTTATGTTC 300
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 255 TTCAAAGGCCCAAGCTAACTCCTGAATTGTTACTCTCTGAGGATGGTCTCGGCTATGTTC 314
Query 301 TTCGTTATTTCCCTAAATCCTTCAAGTATCGTGGCCGAGGCAAGGAGGTTAGCGATTTGG 360
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 315 TTCGCTATTTCCCTAAATCCTTCAAGTATCGTGGCCGAGGCAAAGAGGTGAGCGATTTGG 374
Query 361 GGAATTTGATACGGCTGTACAGTGAGTGGCACTCTCATTTGCTACCTTACTATTCCTTTG 420
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 375 GGAATTTGATACGGTTGTACAGTGAGTGGCACACTCATTTGCTACCTTACTATTCCTTTG 434
Query 421 ATCACTTTGTGCATAAAGTGCAACAAGTCGCTTCTACTAAACGTGTGAAGAACTGTATAA 480
||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||
Sbjct 435 ATCACTTTGTGCATAAAGTTCAACAAGTCGCTTCTACTAAGCGTGTTAAGAATTGTATAA 494
Query 481 ACGAACTGCGAGAAAGGGTTGCCAGCGGAGTTGATCCAAACAAGTTATACGAAAAGCCA- 539
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 495 ATGAACTGCGAGAAAGGGTTGCCAGTGGAGTTGATCCAAACAAGTTATACGAAAAG-CAG 553
Query 540 GAAGAAAATACTGGTCCTTATGATGATCAAGATATGGATCAGCCAGGTCATGAAGAAGAG 599
||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 554 GAAGAAAATACTGTTCCTTCTGATGATCAAGATATGGATCAGCCAAGTCATGACGAAGAG 613
Query 600 AACATACCATCAAAGAGCGCTGATGCTGATACAAATGCTGATGCTTTTGAAGACAGTATG 659
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 614 AACATACCATCAAAGAGCGTTGATGCTGATACAAATGCTGATGCTTTTGAAGACAGTATG 673
Query 660 TTGAATGAGATCTTTGATAATGCTTCACAGCTACCGAGCGATGAACAAAACATGGCTAAA 719
||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct 674 TTGAATGAGATATTTGATAATGCTTCAAAGTTACCGAGCGATGAACAAAACATGGATAAA 733
Query 720 AGCAGTGAACTGACAGAAGAGCAAAGAGCACGTATGGAAGCTAATAGATTGAAGGCAATG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 AGCAGTGAACTGACAGAAGAGCAAAGAGCACGTATGGAAGCTAATAGATTGAAGGCAATG 793
Query 780 GAGAAAGCTCAGAACATTTCCGAGGAACAAAGAGTACGTATGGAAGCTAATAGGCTAAAG 839
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 794 GAGAAAGCTCAGAACATTTCCGAGGAACAGAGAGTACGTATGGAAGCTAATAGGCTAAAA 853
Query 840 GCTCTTGAAAGAGCCAAAGCAAGGCTCCAACCAAATCAAGATTAGACTAGAGATGTTCAA 899
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 GCTCTCGAAAGAGCCAAAGCAAGGCTCCAACCAAATCAAGATTAGACTAGAGATGTTCAA 913
Query 900 TTTG 903
||||
Sbjct 914 TTTG 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44155815213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5