BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927788
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02950.1 | Symbols: THO7, AtTHO7 | Tho complex subunit 7/Mft... 1234 0.0
> AT3G02950.1 | Symbols: THO7, AtTHO7 | Tho complex subunit 7/Mft1p
| chr3:665358-666907 REVERSE LENGTH=1135
Length=1135
Score = 1234 bits (668), Expect = 0.0
Identities = 721/747 (97%), Gaps = 1/747 (0%)
Strand=Plus/Plus
Query 1 GAGG-TTTTAAGTAAGTTGAGATGTCAGTTAAAGCAAGGAGGATTTCTGGTAGATTAGAG 59
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 131 GAGGTTTTTAAGTAAGTTGAGATGTCAGTTAAAGCAAGGAGAATTTCTGGTAGATTAGAG 190
Query 60 ACTGTAGTAACTAAGGTTAATTATGCATTTGATCCGGTGGACGATGACAAGATCATAAGA 119
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 191 ACTGTAGTAACTAAGGTTAATTATGCATTTGATCCTGTTGACGATGACAAAATCATAAGA 250
Query 120 AACCGGCTTCTAACCCGAACCACGACCACTCGAGGCGAGCCTCCATTGAAGAAACTTCAG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 AACCGGCTTCTAACCCGAACCACGACCACTCGAGGCGAGCCTCCATTGAAGAAACTTCAG 310
Query 180 AAGAAGTTCACTTCTTTTGTACTCGAAGTGGATAAAGAAGAAGAGAACTATAACGACTGC 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 311 AAGAAGTTCACTTCTTTTGTACTCGAGGTGGATAAAGAAGAAGAGAACTATAACGACTGC 370
Query 240 GGTAGACTTGCAAAAGCTTTCTTACAGGAACTTTCAACTTTCGAGATCCCGCTTCTGAAG 299
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 371 GGTAGACTTGCCAAAGCTTTTTTACAGGAACTGTCAACTTTCGAGATTCCGCTTCTGAAG 430
Query 300 AGCCAAGCGGTTGTGGAAGCAAATCTTAGGGAGAAAGAGAGCTTTAACGAGGTGAAAGAT 359
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 431 AGCCAAGCGGTTGTGGAAGCAAACCTTAGGGAGAAAGAGAGCTTTAATGAGGTGAAAGAT 490
Query 360 GAGACGGAAAGGCAGATAATGCAGGCGAAAGCTGAGATTGAAGATCTAAAGAAGCAGCTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GAGACGGAAAGGCAGATAATGCAGGCGAAAGCTGAGATTGAAGATCTAAAGAAGCAGCTT 550
Query 420 GAGGAGAGTAAAATAGACAGACAGCATAAAGAGGAGTGTGAGACGATAAGGAAACTGATT 479
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 551 GAGGAGAGTAAAATAGATAGACAGCATAAAGAAGAGTGTGAGACGATAAGGAAACTGATT 610
Query 480 TCTGCTCAACCGCCGAGGTCAGAGACAGAGAAGGTCATATATGAATTGAACAAGGAGATT 539
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 611 TCTGCGCAACCGCCAAGGTCAGAGACAGAGAAGGTTATATATGAATTGAACAAGGAGATT 670
Query 540 GCTGAGCTTGAAGCAGAGAGCACTGCAAGCTGGAGATTGCTTGAGCTAAGGAAGAAGCAG 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 671 GCTGAGCTTGAAGCAGAGAGCACTGCAAGTTGGAGATTGCTTGAGCTAAGGAAGAAGCAG 730
Query 600 TTTGCTCTGTTGTTGCATGTGGTAGATGAGTTGCAGAACACAATGGAAGATGAGCAGAAG 659
|||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 731 TTTGCTCTCCTGATGCATGTGGTGGATGAGTTGCAGAACACAATGGAAGATGAGCAGAAG 790
Query 660 AGTTTGGTGGACGAGATTCGGACAGCGTTGGAAGATCAGAGGAACATAACCGAGGCCATG 719
||||||||||||||||||||| |||||| |||||||||||||||||||||||| || |||
Sbjct 791 AGTTTGGTGGACGAGATTCGGTCAGCGTCGGAAGATCAGAGGAACATAACCGACGCTATG 850
Query 720 TCTGTTGATTAAGTCCAAATCTCGATA 746
|||||||||||||||||||||||||||
Sbjct 851 TCTGTTGATTAAGTCCAAATCTCGATA 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36469990722
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5