BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927794
Length=2215
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02990.1 | Symbols: ATHSFA1E, HSFA1E | heat shock transcript... 1424 0.0
AT3G03010.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) fam... 267 5e-70
AT5G16820.1 | Symbols: HSF3, HSFA1B, ATHSFA1B, ATHSF3 | heat sh... 237 4e-61
> AT3G02990.1 | Symbols: ATHSFA1E, HSFA1E | heat shock transcription
factor A1E | chr3:673472-676403 FORWARD LENGTH=1864
Length=1864
Score = 1424 bits (771), Expect = 0.0
Identities = 839/873 (96%), Gaps = 0/873 (0%)
Strand=Plus/Plus
Query 1326 AAAGTTCATGTGATGGAGCAGAGGCAGCAACAAATGATGTCCTTTCTAGCAAAGGCTGTT 1385
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 680 AAAGTTCATGTGATGGAGCAGAGGCAGCAACAGATGATGTCCTTTCTAGCAAAGGCTGTC 739
Query 1386 CAAAGTCCAGGTTTCTTAAACCAATTTTCCCAGCAGAGTAATGAAGCAAACCAACACATT 1445
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 740 CAAAGTCCAGGTTTCTTAAACCAATTTTCTCAGCAGAGTAATGAAGCAAACCAACACATT 799
Query 1446 TCTGAAAGCAACAAAAAGAGGAGGCTACCTGTTGAGGAGCAGATGAATTCTGGCAGTCAT 1505
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 800 TCTGAAAGCAACAAAAAGAGGAGGCTACCTGTTGAGGACCAGATGAATTCTGGCAGTCAT 859
Query 1506 GGGGTCAGTGGTCTTAGCCGCCAGATTGTGAGATATCAGTCATCGATGAACGATGCAACA 1565
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 GGGGTTAATGGTCTTAGCCGCCAGATTGTGAGATATCAGTCATCGATGAACGATGCAACA 919
Query 1566 AACACTATGCTCCAACAGATACAACAGATGAGTAATTCACCTAGCCATGAATCTCTCTCA 1625
||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 920 AACACTATGCTTCAACAGATACAGCAGATGAGTAATGCACCTAGCCATGAATCTCTCTCA 979
Query 1626 AGCAATCATGGCAGCTTTCTTTTGGGCGATGTTCCAAATTCCAACCTTTCAGACAATGGG 1685
|||||| |||| ||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 980 AGCAATAATGGTAGCTTTCTTTTGGGCGATGTTCCAAATTCTAACATTTCAGACAATGGG 1039
Query 1686 AGCTCCTCAAATGGATCATCTGGAGTTACATTGGCAGATGTTTCATCCATTCTTGCAGGC 1745
|||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1040 AGCTCCTCAAATGGATCACCTGAAGTTACATTGGCAGATGTTTCATCCATTCCTGCAGGC 1099
Query 1746 TTATATCCTGCAATGAAGTACCACGACCCTTGTGAAACAAATCAAGTCCTGGAGACCAAT 1805
|| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1100 TTCTATCCTGCAATGAAGTACCACGAGCCTTGTGAAACAAATCAAGTCATGGAGACCAAT 1159
Query 1806 TTGCCATTTTCTCAAGGTGATCTCTTACCTCCAACGCAAGTAGCAGCAGCTTCTGGGAGC 1865
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1160 TTGCCTTTTTCTCAAGGTGATCTCTTACCTCCAACGCAAGGAGCAGCAGCTTCTGGGAGC 1219
Query 1866 TCAAGTTCGGATCTTGTTGGATGCGAGACAGATAATGGAGAGTGTTTGGATCCAATAATG 1925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 TCAAGTTCGGATCTTGTTGGATGCGAGACAGATAATGGAGAGTGTTTGGATCCAATAATG 1279
Query 1926 GCTGTTTTGGACGGCGCAATCGAACTAGAAGCTGATGCCTTAAATGAGTTGCTTCCTGAA 1985
||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1280 GCTGTTTTGGATGGCGCACTCGAACTAGAAGCTGATACCTTAAATGAGTTGCTTCCTGAA 1339
Query 1986 GTCCAAGATTCTTTTTGGGAACAGTTCATTGGTGAGAGCCCAGTGATTGGTGAGACAGAT 2045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 GTCCAAGATTCTTTTTGGGAACAGTTCATTGGTGAGAGCCCAGTGATTGGTGAGACAGAT 1399
Query 2046 GAGCTAATCTCAGTATCAGTGGAAAATGAACTGATAATGGAGCAGCTAGAATTACAATCA 2105
||| ||||||||| |||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 1400 GAGTTAATCTCAGGATCAGTGGAAAATGAACTGATATTGGAGCAACTAGAGTTACAATCA 1459
Query 2106 GGCCTGGGTAGTGTGTGGAGCAAGAACCAACAAATGAACCATCTTACTGAACAGATGGGA 2165
|||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1460 ACCCTGAGTAATGTGTGGAGCAAGAATCAACAAATGAACCATCTTACTGAACAGATGGGA 1519
Query 2166 CTTCTCACATCAGATGCTCTCAGAAAATGAGAT 2198
|||||||||||||||||||||||||||||||||
Sbjct 1520 CTTCTCACATCAGATGCTCTCAGAAAATGAGAT 1552
> AT3G03010.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) family
protein | chr3:678688-680605 REVERSE LENGTH=950
Length=950
Score = 267 bits (144), Expect = 5e-70
Identities = 176/191 (92%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 1137 CTTTATAGGAGG-ATGGATTTTGTGTGGTTATTAAGTGTTTTACTTCTTGGAGCTGCACG 1195
||||| |||||| |||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 105 CTTTA-AGGAGGTATGGATTTGGTGTGGTTATTAAGTGTTTTACTTGTTGGAGCTGCACT 163
Query 1196 TGGATATTACATCAGCACTTTACGACAAACCCGGCGAATCTTTCTCTCCTCCAAATCTGT 1255
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 164 TGGATATTACATCAGCACTTTACGACAAACCCGCCGAATCTTTCTCTCCTCCAAATCTGT 223
Query 1256 CACCGTTA-ATGCAGGATCCAGCGGAAATAAGAAGATCAAGGCCAAGGAACCCCTTGAGA 1314
| || | | |||||||||||||||| |||||||| | |||| ||||||||||||| ||||
Sbjct 224 CGCCAT-AGATGCAGGATCCAGCGGGAATAAGAAAACCAAGTCCAAGGAACCCCTCGAGA 282
Query 1315 TAGAGAAACTC 1325
|||||||||||
Sbjct 283 TAGAGAAACTC 293
> AT5G16820.1 | Symbols: HSF3, HSFA1B, ATHSFA1B, ATHSF3 | heat
shock factor 3 | chr5:5530273-5532792 FORWARD LENGTH=1833
Length=1833
Score = 237 bits (128), Expect = 4e-61
Identities = 335/429 (78%), Gaps = 37/429 (9%)
Strand=Plus/Plus
Query 1326 AAAGTTCATGTGATGGAGCAGAGGCAGCAACAAATGATGTCCTTTCTAGCAAAGGCTGTT 1385
|||||||| ||||||||||| ||||| |||||||||||||| ||| ||||||||||||||
Sbjct 726 AAAGTTCAGGTGATGGAGCAAAGGCAACAACAAATGATGTCGTTTTTAGCAAAGGCTGTT 785
Query 1386 CAAAGTCCAGGTTTCTTAAACCAATTT-TCC--CAGCAGAGTAATGAAG-CAAACCA-AC 1440
||||||||||||||||||||||| || | | ||| | | |||||| | ||| | | ||
Sbjct 786 CAAAGTCCAGGTTTCTTAAACCAGTTAGTACAACAGAATAATAATGATGGCAA-C-AGAC 843
Query 1441 ACATTTCTGAAAGCAACAAAAAGAGGAGGCTACCTGTTGAGGAGCAG-ATGAATTC-TGG 1498
| ||| | | |||||||||||||||||| || ||||| || |||||| | |||| | |||
Sbjct 844 AAATTCCAGGAAGCAACAAAAAGAGGAGACTTCCTGTAGATGAGCAGGA-GAAT-CGTGG 901
Query 1499 CAGTCA-TGGGG-TCAGTGGTCTTAGCCGCCAGATTGTGAGATATCAGTCATCGATGAAC 1556
| || || || | | |||||||| |||||||||||| ||||||||| | ||||| |||
Sbjct 902 T-GACAATGTGGCTAA-TGGTCTTAACCGCCAGATTGTTAGATATCAGCCGTCGATAAAC 959
Query 1557 GATGCA--ACAAACACTATGCTCCAACAGATAC--AACAGA-TGAGTAATTCACCTAGCC 1611
|| ||| ||||| | |||||| | |||| | | || | | | |||| |||||| |
Sbjct 960 GAAGCAGCACAAA-A-TATGCTTCGACAGTT-CTTAA-ATACT-AGTACCTCACCTCGGT 1014
Query 1612 ATGAATCTCTCTCAAGCAATCATGGCAGCTTTCTT-TTGGGCGATGTTCCAAATTCCAAC 1670
||||||| | |||| ||||| || ||| |||| | ||||| |||||||| | ||| | |
Sbjct 1015 ATGAATCAGTTTCAAACAATCCTGACAG-TTTCCTATTGGGTGATGTTCCCAGTTCTA-C 1072
Query 1671 CT-T-TCAGACAATGGGAGCTCCT-CAAATGGA-TCATCTGGAGTTACATTGGCAGATGT 1726
|| | | ||||||||||| | ||| ||| | || | |||||||| |||||||| || ||
Sbjct 1073 CTCTGT-AGACAATGGGAAC-CCTTCAAGTAGAGTT-TCTGGAGTAACATTGGCCGA-GT 1128
Query 1727 TT-CATCCA 1734
|| || |||
Sbjct 1129 TTTCACCCA 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109888993005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5