BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927795

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03010.1 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) fam...   453    6e-127
  AT3G02990.1 | Symbols: ATHSFA1E, HSFA1E | heat shock transcript...  58.4    5e-08 


> AT3G03010.1 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) family 
protein | chr3:678688-680605 REVERSE LENGTH=950
Length=950

 Score =  453 bits (245),  Expect = 6e-127
 Identities = 297/320 (93%), Gaps = 12/320 (4%)
 Strand=Plus/Plus

Query  44   CAAGTCCAAGGAACCCCTCGAGATAGAGAAACTCGCTGATCTTCGCAAAAATTTCAAAAT  103
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  260  CAAGTCCAAGGAACCCCTCGAGATAGAGAAACTCGCTGATTTTCGCAAAAATTTCAAAAT  319

Query  104  GGTTTTGGTTGTGAGGATTGATCTTAAAATGGGTAAAGGGAAGATTGCAGCGC--T-CA-  159
            ||||||||||||||||| ||||||||||||||||||||||||||||||||| |  | || 
Sbjct  320  GGTTTTGGTTGTGAGGAATGATCTTAAAATGGGTAAAGGGAAGATTGCAGCTCAATGCAG  379

Query  160  --ATG---C---AGGTTTATACAAGAAACTCCTTCAACGGGCGCCAAGAGCCTTGAACAG  211
              |||   |   ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  380  TCATGCAACTTTAGGTTTATACAAGAAACTCCTTCAACGGGCGCCAAAAGCCTTGAACAG  439

Query  212  ATGGGAATATTGTGCTCAGGGAAAAGTTGTTGTCAAAATCGAAAGTGAGGAAGAGATGCT  271
            |||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||
Sbjct  440  ATGGGAATATTGTGCTCAGCCAAAAGTTGTTGTCAAAATTGAAAGTGAGGAAGAGATGCT  499

Query  272  AGTTTTGCAAGAAAGAGCAAAGTCCCTTAAACTGCCAACCCATATCACCATTGCTGCCGG  331
            |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| ||
Sbjct  500  AGTTTTGCAAGAAAGAGCAAAGACCCTGAAACTGCCAACCCATATCACCATTGATGCGGG  559

Query  332  AAAAACACAGATCGCTCCAA  351
            ||||||||||||||||||||
Sbjct  560  AAAAACACAGATCGCTCCAA  579


> AT3G02990.1 | Symbols: ATHSFA1E, HSFA1E | heat shock transcription 
factor A1E | chr3:673472-676403 FORWARD LENGTH=1864
Length=1864

 Score = 58.4 bits (31),  Expect = 5e-08
 Identities = 31/31 (100%), Gaps = 0/31 (0%)
 Strand=Plus/Plus

Query  3     CGCAACAACAAAAAGAATATGACCAAAGGAG  33
             |||||||||||||||||||||||||||||||
Sbjct  1604  CGCAACAACAAAAAGAATATGACCAAAGGAG  1634



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20257902847


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5