BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927799
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16880.1 | Symbols: | Target of Myb protein 1 | chr5:554891... 1016 0.0
> AT5G16880.1 | Symbols: | Target of Myb protein 1 | chr5:5548914-5551463
FORWARD LENGTH=1655
Length=1655
Score = 1016 bits (550), Expect = 0.0
Identities = 972/1171 (83%), Gaps = 47/1171 (4%)
Strand=Plus/Plus
Query 18 AAGATGAGTGACAAT-TTAATGGACAAAGTTAGCTCCTTTAGTGAGCGTCTCAAGATTGG 76
|||||| |||||||| || ||||||||||||| | | ||| ||||||| || ||||| ||
Sbjct 240 AAGATGGGTGACAATCTT-ATGGACAAAGTTACCGCATTTGGTGAGCGCCTGAAGATCGG 298
Query 77 TGGTTCTGAGGTGAGCAAGAAAG-TGACTGCTGGTGTGAGCTCTATGAG-TTTCAAAGTG 134
||||| || |||||||| ||| | | ||||||||||||||| ||||| ||| ||||||
Sbjct 299 AGGTTCGGAAGTGAGCAA-CAAGATCAGTGCTGGTGTGAGCTCAATGAGCTTT-AAAGTG 356
Query 135 AAGGAACTTTTCCAAGGTCCTAACCCAACTGATAAACTAGTCGAGGATGCTACTTCTGAG 194
||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||| |||||
Sbjct 357 AAGGAACTTTTTCAAGGTCCAAACCCAACTGATAAAATAGTCGAAGATGCTACTACTGAG 416
Query 195 AATCTAGAGCAACCTGATTGGGCTATGAACTTGGAAATATGCGATATGATCAACCAGGAG 254
||||||||| ||||||| |||| |||||| |||||||| || |||||||| || || |||
Sbjct 417 AATCTAGAGGAACCTGACTGGGATATGAATTTGGAAATTTGTGATATGATAAATCAAGAG 476
Query 255 A-AGATCATTAGCGTTGATTTGATCCGCGGGATAAAGAAGAGGATTATGATGAAACAGCC 313
| | || | ||||||||| |||||||| || ||||||||||||||||||||||| |||||
Sbjct 477 ACA-ATTAATAGCGTTGAGTTGATCCGTGGTATAAAGAAGAGGATTATGATGAAGCAGCC 535
Query 314 GAGGATTCAGTACCTTGCCTTGGTTTTACTTGAGACTTGTGTTAAGAATTGTGAGAAAGC 373
||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||| ||
Sbjct 536 GAGGATTCAGTACCTTGCCTTGGTTTTGCTCGAGACGTGTGTTAAGAACTGTGAGAAGGC 595
Query 374 CTTCTCTGAGATTGCTGCTGAAAGAGTTCTCGATGAAATGGTTAAGCTGATTGATGATCC 433
|| || ||| | || || || ||||| || ||||||||||| |||||||||||||||||
Sbjct 596 GTTTTCAGAGGTGGCAGCAGAGAGAGTCCTTGATGAAATGGTAAAGCTGATTGATGATCC 655
Query 434 ACAAACCGTTGTCAATAATCGGAATAAAGCTTTGATACTGATTGAAGCTTGGGGGGAATC 493
|||||| ||||| ||||| || || ||||||||||| ||||||||||||||||| |||||
Sbjct 656 ACAAACAGTTGTTAATAACCGAAACAAAGCTTTGATGCTGATTGAAGCTTGGGGAGAATC 715
Query 494 AACCAGTGAACTCCGTTACTTACCAGTTTTCGAAGAAACTTACAAGAGCCTAAAATCAAG 553
|||||||||||| || ||| |||||||||||||||||||||| |||||| ||||| ||||
Sbjct 716 AACCAGTGAACTTCGCTACCTACCAGTTTTCGAAGAAACTTATAAGAGCTTAAAAGCAAG 775
Query 554 AGGTATCCGCTTCCCTGGACGTGACAACGAGAGCTTAGCGCCTATTTTCACCCCTCCTAG 613
|||||| |||||||||||||| |||||||| ||||| || ||||||||||| ||| || |
Sbjct 776 AGGTATTCGCTTCCCTGGACGAGACAACGAAAGCTTGGCACCTATTTTCACTCCTGCTCG 835
Query 614 GTCTTCTTCAATACCAGAAGTTGACA--CTGGTCTTGCTCAGCATGT-CAACGAGCATGC 670
||| || || ||||||| | || | ||| |||| |||||||||| || || | |||
Sbjct 836 GTCAACTCCAGCACCAGAACT-GA-ATGCTGATCTTCCTCAGCATGTGCAT-GAACCTGC 892
Query 671 ACATGTGCAGTACAATGCTCCTCCTGTTAGAACCTTTACTGCGGAGGAGACAAAGGAAGC 730
|||| | ||||| ||| | | | ||| |||| ||||||||| ||| |||||||||||||
Sbjct 893 ACATATCCAGTATGATG-TGC-C-TGTAAGAAGCTTTACTGCTGAGCAGACAAAGGAAGC 949
Query 731 TTTTGATGTTGCAAGGAACAGCATTGAACTTCTTACTACAGTTTTGTCATCTTCACCTCA 790
||||||| | ||||| |||||||||||||||||| | || ||| |||| || || |||||
Sbjct 950 TTTTGATATAGCAAGAAACAGCATTGAACTTCTTTCCACGGTTCTGTCCTCCTCGCCTCA 1009
Query 791 TCAGGACGTTTTACATGATGACTTGACA-CGTACACTTGTACAACAATGTCGCCAATCCC 849
|| || | |||||| |||||||| ||| || |||||||||||||||||||| ||||| |
Sbjct 1010 ACATGATGCTTTACAGGATGACTTAACAACG-ACACTTGTACAACAATGTCGTCAATCTC 1068
Query 850 AAACCACAGTCCAAAGAATCATAGAGACATGT-GGAGAAGACGAAGCCCTT-TTATTCGA 907
||||||| |||||||||||||| || ||| | || ||| ||||||||||| || |||||
Sbjct 1069 AAACCACTGTCCAAAGAATCATTGAAACA-GCAGGTGAAAACGAAGCCCTTCTT-TTCGA 1126
Query 908 AGCATTGAATGTAAACGACGAGCTAGTGAAAACGCTGTCAAAATATGAAGAGTTGAAGAA 967
||| |||||||| |||||||||||||||||||||||||| || ||||| ||| |||| ||
Sbjct 1127 AGCCTTGAATGTGAACGACGAGCTAGTGAAAACGCTGTCTAAGTATGAGGAGATGAACAA 1186
Query 968 ACCGTCTGCACCATTAGT-TGCACCA-GAGCCAGCCATGATTCCTGTTGCT-ACTGAATC 1024
||| |||||||| || | ||| | || |||||||||||||| |||||| | || |
Sbjct 1187 ACCCTCTGCACCGCTAACCT-CAC-ATGAACCAGCCATGATTCCCGTTGCTGAA-GAGCC 1243
Query 1025 TGATGACTCTC-ATATTTATGCAAAAGAAGAAGAATCACTGGTCAGGAAATACT-CAGGC 1082
|||||||||| | ||| ||| || || |||||||| ||||| || |||| || | ||
Sbjct 1244 CGATGACTCTCCA-ATTCATGGAA--GA-GAAGAATCTCTGGTTAGAAAAT-CTTCTGGT 1298
Query 1083 AGTGCTCAAGGTGGGACTACTCATGGGAGCGGAAGC-AGCAGCgatgacatgatgatgga 1141
|| || |||||| | | | ||||| || || | || | |||||||||||| | |
Sbjct 1299 -GT--TCGAGGTGG-ATT-C-CATGG-AGGGGGTGGTAGTGGAGATGACATGATG--G-A 1348
Query 1142 tgatctggatgagatgatATTTGGTAAGAAA 1172
|||||| |||||||||||||| |||||||||
Sbjct 1349 TGATCTTGATGAGATGATATTCGGTAAGAAA 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63553889970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5