BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927805

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03070.1 | Symbols:  | NADH-ubiquinone oxidoreductase-relate...   584    2e-166


> AT3G03070.1 | Symbols:  | NADH-ubiquinone oxidoreductase-related 
| chr3:696299-698156 REVERSE LENGTH=714
Length=714

 Score =  584 bits (316),  Expect = 2e-166
 Identities = 350/367 (95%), Gaps = 0/367 (0%)
 Strand=Plus/Plus

Query  3    TTTCTCGGTGTTGGAGCAATGGCGTCAAATCTCCTGAAAGCCCTAATCCGATCGCAGATT  62
            ||||||| ||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  70   TTTCTCGTTGTTGGAACAATGGCGTCGAATCTCCTGAAAGCCCTAATCCGATCTCAGATT  129

Query  63   CTTCCATCTTCGAGGAGGAATTTTAGTGTGGCGACCACACAACTCGGCATTCCAACAGAC  122
            ||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct  130  CTTCCATCTTCCAGGAGGAATTTCAGTGTGGCGACCACACAGCTTGGCATTCCAACAGAC  189

Query  123  GATCTAGTCGGCAATCACACCGCCAAATGGATGCAGGATAGAAGCAAGAAATCACCTATG  182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  190  GATCTAGTCGGCAATCACACCGCCAAATGGATGCAGGATAGAAGCAAGAAATCACCTATG  249

Query  183  GAACTGATCAGTGAGGTTCCACCTATCAAAGTTGATGGAAGGATTGCTGCTTGTGAAGGA  242
            |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  250  GAACTGATTAGTGAGGTTCCACCTATCAAAGTTGATGGAAGGATTGTTGCTTGTGAAGGA  309

Query  243  GACACCAATCCGGCCCTGGGTCATCCAATCGAGTTCATATGCCTCGACCTAGATGAGCCT  302
            ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct  310  GACACCAATCCGGCCCTAGGTCATCCAATCGAGTTCATATGCCTCGACCTAAATGAGCCT  369

Query  303  GCGATCTGCAAGTACTGCGGCCTTCGCTATGTTCAAGATCATCACCACTAAGCCAAATTC  362
            |||||||||||||||||||||||||| |||||||||||||||||||| | || |||||||
Sbjct  370  GCGATCTGCAAGTACTGCGGCCTTCGTTATGTTCAAGATCATCACCATTGAGGCAAATTC  429

Query  363  CGAAAGT  369
             ||||||
Sbjct  430  TGAAAGT  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17543444401


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5