BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927816

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03100.1 | Symbols:  | NADH:ubiquinone oxidoreductase, 17.2k...   896    0.0  


> AT3G03100.1 | Symbols:  | NADH:ubiquinone oxidoreductase, 17.2kDa 
subunit | chr3:705381-707651 REVERSE LENGTH=736
Length=736

 Score =  896 bits (485),  Expect = 0.0
 Identities = 514/528 (97%), Gaps = 2/528 (0%)
 Strand=Plus/Plus

Query  2    gagagagagagagagaTAGCGGAGGACGATGGCTTTGACGGTGGCGAAGAGTGCGTTGGA  61
            ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  46   GAGAGAGAGAGAGCGATAGCGGAAGACGATGGCTTTGACGGTGGCGAAGAGTGCGTTGGA  105

Query  62   GGCCATTAGAGAGAAAGGTCTCGGCGGTTTCATGAGGATGATCCGAGAAGAAGGCTTTC-  120
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct  106  GGCGATTAGAGAGAAAGGTCTCGGCGGTTTCATGAGGATGATCCGAGAAGAAGGC-TTCA  164

Query  121  TGAGATGCCTACCAGATGGGAACCTCTTGCAAACTAAAATACACAACATAGGAGCAACAC  180
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct  165  TGAGATGCCTACCAGATGGGAACCTCTTGCAAACTAAAATACATAACATAGGAGCGACAC  224

Query  181  TTGTTGGTGTTGACAAGTTCGGTAACAAATACTACCAGAAGCTGGGCGATACTCAATACG  240
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  225  TTGTTGGTGTTGACAAGTTCGGTAACAAATACTACCAGAAGCTAGGCGATACTCAATACG  284

Query  241  GTAGGCACAGATGGGTGGAGTATGCTTCAAAGGATCGTTACAATGCATCTCAAGTGCCAG  300
            |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct  285  GTAGGCACAGATGGGTAGAGTATGCTTCAAAGGATCGTTACAACGCATCTCAAGTACCAG  344

Query  301  CTGAATGGCACGGGTGGCTTCATTTCATCACTGATCACACTGGAGATGAGCTCTTGAGTT  360
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  345  CTGAATGGCACGGGTGGCTTCATTTCATCACTGATCACACTGGCGATGAGCTCTTGAGTT  404

Query  361  TGAAACCAAAAAGGTATGGGCTTGAGCATAAAGAGAACTTCTCTGGAGAAGGTGATGCAT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  405  TGAAACCAAAAAGGTATGGGCTTGAGCATAAAGAGAACTTCTCTGGAGAAGGTGATGCAT  464

Query  421  ACATCTACCATTCGAAGGGACATACCTTGAACCCGGGACAAAAGAACTGGACTCGGTATC  480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  465  ACATCTACCATTCGAAGGGACATACCTTGAACCCGGGACAAAAGAACTGGACTCGGTACC  524

Query  481  AATCATGGGTACCCACCAAGACTCAGTAAGGAGATGATATTTTGGTTT  528
            |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  525  AATCATGGGTACCCACCAAGACTCAGTAAGAAGATGATATTTTGGTTT  572



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25368244235


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5