BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927821
Length=403
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 560 3e-159
> AT3G03150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G17165.1);
Has 39 Blast hits to 39 proteins in 11 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:727554-729504
REVERSE LENGTH=692
Length=692
Score = 560 bits (303), Expect = 3e-159
Identities = 372/405 (92%), Gaps = 6/405 (1%)
Strand=Plus/Plus
Query 1 CGACGAAGCAACAGAGTTTTATGGC-A--ACCAGATCGAAGAGCTTTCAGTTGATCACCG 57
|||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 128 CGACGAAGAAACACAGTTTTATGGCAACCACCAGATCGAAGAGCTTTCAGTTGATCACCA 187
Query 58 GCTTAAAGAAACATCTGGTAAACCCACGCGCTTCTC-CACGCGCCACCGCCTCTGCTCTC 116
|||||| |||||| || || ||| |||||||||| | |||||||||||||||||||||||
Sbjct 188 GCTTAAGGAAACACCTAGTTAACACACGCGCTTC-CACACGCGCCACCGCCTCTGCTCTC 246
Query 117 TTCCCTTCACGTCGGAGTGGTCATTCCTCGGCGTATGACAAGAACGTGGAGGATGAACTG 176
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 247 TTCCCTTCACGTCGGAGTGGACATTCCTCGGCGTATGACAAGAACGTGGAGGATGAATTG 306
Query 177 CATGCAAGTGCAGTACCTGACGAAATCATAAAGCCAGATTCTGATAAATATTGGTCTCCA 236
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 307 CATGCAAGTGCAGTACCTGACGAAGTTATAAAGCCAGATTCTGATAAATATTGGTCTCCT 366
Query 237 CATCCCAAAACTGGAGTTTTCGGTCCCTCCCCGACTGAGCACAGCGCCGCCGCTGAGGGT 296
|| |||||||| ||||| ||||||||||| ||||||||||||||||| |||| ||||||
Sbjct 367 CACCCCAAAACAGGAGTCTTCGGTCCCTCTACGACTGAGCACAGCGCCACCGCCGAGGGT 426
Query 297 GCACGCCAGGACACAGCGGTGCTGGAGGAGACTGCTTGGTTTCGCCCAACAAGTCTCGAG 356
|||| |||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 427 GCACACCAGGACACAGCAGTGCTGGAGGAGACCGCCTGGTTTCGCCCAACAAGTCTCGAG 486
Query 357 GACTCGGACAAGACTCACCATGTTTAAATTCTCTCTTTCTCTCTG 401
|| |||||||||||||||||||||| | | |||||||||||||||
Sbjct 487 GATTCGGACAAGACTCACCATGTTTGAGT-CTCTCTTTCTCTCTG 530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19051476871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5