BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927824

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03180.1 | Symbols:  | Got1/Sft2-like vescicle transport pro...   752    0.0  


> AT3G03180.1 | Symbols:  | Got1/Sft2-like vescicle transport protein 
family | chr3:733387-734483 FORWARD LENGTH=629
Length=629

 Score =  752 bits (407),  Expect = 0.0
 Identities = 440/456 (96%), Gaps = 1/456 (0%)
 Strand=Plus/Plus

Query  1    TTGTCCAA-TTCGTCGGTAACAATGGCTTCCTTGGAGATGAATGACCTAAAAAAGATAGG  59
            |||| ||| ||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  123  TTGTGCAATTTTTTCGGTAACAATGGCTTCCTTGGAGATGAATGACCTAAAAAAGATAGG  182

Query  60   GCTAGGTTTGACAGGGTTTGGTGTGTTCTTTACATTCCTAGGAGTGATATTTGTGTTTGA  119
            |||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  183  GCTAGGTTTGACTGGATTTGGTGTGTTCTTTACATTCCTGGGAGTGATATTTGTGTTTGA  242

Query  120  CAAGGGACTCATCGCCATGGGGAATGTTCTCTTCTTAGCTGGTGTGACTCTAACCATTGG  179
            |||||||||||| |||||||||||  | ||||||||||||||||||||||||||||||||
Sbjct  243  CAAGGGACTCATAGCCATGGGGAACATCCTCTTCTTAGCTGGTGTGACTCTAACCATTGG  302

Query  180  AATCAACCCAGCAATCCAATTCTTTACTAAACGGCAGAATTTTAAGGGTACTATATCGTT  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  303  AATCAACCCAGCAATCCAATTCTTTACTAAACGGCAGAATTTTAAGGGTACTATATCATT  362

Query  240  TGGATTGGGCTTCTTGTTGGTTGTGTTTGGATGGCCTATTTTCGGTTTGCTTCTAGAATC  299
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  363  TGGATTGGGTTTCTTGTTGGTTGTGTTTGGATGGCCTATTTTCGGTTTGCTTCTTGAATC  422

Query  300  ATATGGGTTCCTTGTACTCTTCAGTGGTTTCTGGCCTACACTTGCCGTCTTCCTTCAAAG  359
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  423  ATATGGGTTCCTTGTGCTCTTCAGTGGTTTCTGGCCTACACTTGCCGTCTTCCTTCAAAG  482

Query  360  GATACCTCTATTAGGCTGGCTTTTGCAGCAACCATACATCAGATCGTTGCTGGATCGCTA  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  483  GATACCTCTATTAGGCTGGCTTTTGCAGCAACCATACATCAGATCGTTGCTGGATCGCTA  542

Query  420  CCGTGGAAGGCGTGTCCCTGTCTAAACCCTCTTTGC  455
            |||||||||||||||||||||||||||| |||||||
Sbjct  543  CCGTGGAAGGCGTGTCCCTGTCTAAACCTTCTTTGC  578



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22052790533


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5