BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927835
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 778 0.0
> AT3G03280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G17350.1);
Has 137 Blast hits to 137 proteins in 11 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:765459-766387 FORWARD LENGTH=929
Length=929
Score = 778 bits (421), Expect = 0.0
Identities = 488/521 (94%), Gaps = 2/521 (0%)
Strand=Plus/Plus
Query 12 ACAATAACAATGGGCAACTACGTTTCATGCGCTCTAAACAAAACGTCATCGTCACCGTTG 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 ACAATAACAATGGGCAACTACGTTTCATGCGCTCTAAACAAAACGTCATCGTCACCGTTG 151
Query 72 GCCAAAGTGATTCTCCCGGACGGTGGAGTGCGTGACATCCACGTGCCGATGAAAGCAGCC 131
|| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 152 GCAAAAGTGATTCTCCCTGACGGTGGAGTGCGTGACATCCACGTGCCGACGAAAGCAGCC 211
Query 132 GAGCTCATGATGGAGATGCCAAGATATTTCCTCGTCGACGCCAAATCGTTGAAAATCGGC 191
||||||||||||||||||||||| ||||||||||||||| |||| ||| ||||| | |||
Sbjct 212 GAGCTCATGATGGAGATGCCAAGCTATTTCCTCGTCGACACCAAGTCGGTGAAAGTAGGC 271
Query 192 CGTAAATTCATCCCACTCGCCGCCGACGACGATCTCGACCTTGGAGGCT-TCCATGTGTA 250
|||||||| |||||||||||||||||||||||||| || |||||||||| || |||||||
Sbjct 272 CGTAAATTTATCCCACTCGCCGCCGACGACGATCTTGATCTTGGAGGCTGTC-ATGTGTA 330
Query 251 CGTTGCTTTTCCGATGACACGTGCCACTTCTGCAGCCAACGCCTCCGACTTGGCTCGGCT 310
||| || ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 331 CGTCGCATTTCCGATGACACGTGCCACTTCTGCAGCCAACGCTTCCGACATGGCTAGGCT 390
Query 311 CTACCTCGCCGGAAAGAAACGTACGAAAAGCTGCGATAATAGGAGAGTGTCTCCGGAAGA 370
||||||| ||||||||||||| ||||||| ||||| | |||||||||||||||||||| |
Sbjct 391 CTACCTCACCGGAAAGAAACGCACGAAAAACTGCGGTCATAGGAGAGTGTCTCCGGAAAA 450
Query 371 TGAAGATAACGATGACGTAAGGCTGATCGGACCGAAGCTGAACCTTGAAGACATAGAAGA 430
||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 451 TGAAGATAATGATGACGTGAGGCTGATCGGACCGAAGCTGAATCTTGAAGACATAGAAGA 510
Query 431 GTTCTCGGCGGCGGAGTTTATTCATCGGATCTCTGTTTCCAAATCTAAGAAACCACAGTT 490
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 511 GTTCTCGGCGGCAGAGTTTATTCATCGGATCTCTGTTTCGAAATCTAAGAAACCACAGTT 570
Query 491 GGAGACGATAGTTGAAGAACATGTGCCCTAATCCAACAAAA 531
||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 571 GGAGACGATAGCTGAAGATCATGTGCCCTAATTCAACAAAA 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26021288146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5