BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927846 Length=247 Score E Sequences producing significant alignments: (Bits) Value AT3G03720.1 | Symbols: CAT4 | cationic amino acid transporter 4... 228 2e-59 AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein ... 204 4e-52 AT3G04184.1 | Symbols: | unknown protein; Has 30201 Blast hits... 163 6e-40 > AT3G03720.1 | Symbols: CAT4 | cationic amino acid transporter 4 | chr3:925612-930974 REVERSE LENGTH=2664 Length=2664 Score = 228 bits (123), Expect = 2e-59 Identities = 154/167 (92%), Gaps = 9/167 (5%) Strand=Plus/Plus Query 87 GGAGCTGGGACATGGATCAGGGTCTTGGTATGGCTACTTATTGGAAGCATGATCTATCTC 146 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 2257 GGAGCTGGGACATGGATCAGGGTCTTGATATGGCTACTTATTGGAAGCATGATCTATATC 2316 Query 147 TTCTATGGCCGATCTCACAGCTTACTGAACAATGCGGTTTAC------AC---GACTTGT 197 |||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 2317 TTCTATGGCCGATCTCACAGCTTACTGAACAATGCGGTTTACGTTCCCACAATGACTTGT 2376 Query 198 ACCAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTCAATGC 244 || |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2377 ACGAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGATCAATGC 2423 > AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein Fb12, blastp match of 53% identity and 1.2e-13 P-value to GP|25992543|gb|AAN77151.1||AF531371 fiber protein Fb12 {Gossypium barbadense} | chr2:16277009-16279354 REVERSE LENGTH=2346 Length=2346 Score = 204 bits (110), Expect = 4e-52 Identities = 151/169 (89%), Gaps = 9/169 (5%) Strand=Plus/Plus Query 88 GAGCTGGGACATGGATCAGGGTCTTGGTATGGCTACTTATTGGAAGCATGATCTATCTCT 147 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| Sbjct 2006 GAGCTGGGACATGGATCAGGGTCTTGGTATCGCTACTTATCGGAAGCATGATCTGTCTCT 2065 Query 148 TCTATGGCCGATCTCACAGCTTACTGAACAATGCGGTTTAC-----A-C---GACTTGTA 198 ||| ||||||||||||| | || |||||||||| ||||||| | | |||||||| Sbjct 2066 TCTGTGGCCGATCTCACTGTTTGCTGAACAATGTGGTTTACGTTCCAACAACGACTTGTA 2125 Query 199 CCAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTCAATGCAGC 247 |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2126 CCAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTTAATGCAGC 2174 > AT3G04184.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:1100085-1100246 REVERSE LENGTH=162 Length=162 Score = 163 bits (88), Expect = 6e-40 Identities = 128/145 (88%), Gaps = 12/145 (8%) Strand=Plus/Plus Query 94 GGA-CATGGA-TCAGGGTCTTGGTATGGCTACTTATTGGAAGCATGATCTATCTCTTCTA 151 ||| || ||| |||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 19 GGATCAGGGATTCAGGGTCTTGGTATGGCTATTTACTGGAAGCATGATCTATCTCTTCTA 78 Query 152 TGGCCGATCTCACAGCTTACTGAACAATGCGGTTTAC-----A-CGAC---TTGTACCAG 202 ||||||||||||||||||||||||||||| ||||||| | |||| ||| ||||| Sbjct 79 TGGCCGATCTCACAGCTTACTGAACAATGTGGTTTACGTTCCAACGACGACTTGAACCAG 138 Query 203 AAAAACAACAGATCATCTTGCTTAA 227 |||| |||||||||||||||||||| Sbjct 139 AAAA-CAACAGATCATCTTGCTTAA 162 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11209708027 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5