BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927850

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65346.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   350    5e-96
  ATMG00560.1 | Symbols: RPL2 | Nucleic acid-binding, OB-fold-lik...  89.8    1e-17


> AT1G65346.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT2G07705.1); 
Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24273181-24274038 
REVERSE LENGTH=369
Length=369

 Score =  350 bits (189),  Expect = 5e-96
 Identities = 196/199 (98%), Gaps = 1/199 (1%)
 Strand=Plus/Plus

Query  21   ATGGAATTGAGGTTCGATGTAATTGACCTGCCTTATGTTGGACTTCCCAACTTACCTAGC  80
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  145  ATGGAATTGAGGTTCGATGTAATTGACCTGCCTTATGTTGGACTTCCCAACTTACCTAGC  204

Query  81   GGAAGAAAAGGGCTAGGACCTATAAATAGAAATATGTCTAGGTCACTTCCACCAACAACT  140
            |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct  205  GGAAGAAAAGGGCTAGGACCTATAAATATAAATATGTATAGGTCACTTCCACCAACAACT  264

Query  141  CAAGCTATTTCTTACTGGGATTCTCCACAAGTACTAGAAAGTATGGGATCTCTACAACTT  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  265  CAAGCTATTTCTTACTGGGATTCTCCACAAGTACTAGAAAGTATGGGATCTCTACAACTT  324

Query  201  GTTCCACAAACTCAACACT  219
            ||||||||||||||| |||
Sbjct  325  GTTCCACAAACTCAA-ACT  342


> ATMG00560.1 | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like 
protein | chrM:154744-157345 FORWARD LENGTH=1050
Length=1050

 Score = 89.8 bits (48),  Expect = 1e-17
 Identities = 51/52 (98%), Gaps = 1/52 (2%)
 Strand=Plus/Plus

Query  216  CACTTATATAATAGCCAGTCATCAATTAGAAGCAGGCAAAATGGATGATGAA  267
            |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  918  CACTTATATAATAGCCAGTCATCAATTAGAAGCAGGCAAAATGG-TGATGAA  968



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13019346991


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5