BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927851
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 |... 457 1e-127
ATMG01080.1 | Symbols: ATP9 | mitochondrial F0-ATPase subunit 9... 331 8e-90
AT2G07671.1 | Symbols: | ATP synthase subunit C family protein... 331 8e-90
ATMG00040.1 | Symbols: ORF315 | ATP synthase subunit C family p... 217 2e-55
> AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17
| chr5:26157863-26161096 FORWARD LENGTH=2196
Length=2196
Score = 457 bits (247), Expect = 1e-127
Identities = 279/294 (95%), Gaps = 4/294 (1%)
Strand=Plus/Plus
Query 178 GAGTAGAATTACAGCCATATGGCCTTGTGAACTTATGGAACAGTTGTTATGCAAATGCTT 237
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 968 GAGTAGAATTACAGCCATTTGGCCTTGTGAACTTAGGGAACAGTTGTTATGCAAATGCTG 1027
Query 238 TCCTTCAGTGCCTGGCATTCACTCAGCTGCT-ATTATCATACCTTATTAGGGGATTACAC 296
||||||||||| |||||||||||| || || | ||||||||||||||||||||||||||
Sbjct 1028 TCCTTCAGTGCTTGGCATTCACTCGGCCACTGA-TATCATACCTTATTAGGGGATTACAC 1086
Query 297 TCTAAAACATGTA-AAAGAATGAGTTGGTGTTTTGTTTGTGAGTTTGAACACTTAATTTT 355
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1087 TCTAAAACATGTAGAAAGAA-GAGTTGGTGTTTTGTTTGTGAGTTTGAACACTTAATTTT 1145
Query 356 AAAGGCAAGGGGAGGAGAATATCCTCTTTCACCTATCAAGATCTTATCTAAATTACAAAA 415
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1146 AAAGGCAAGGGGAGGAGAATCTCCTCTTTCACCTATCAAGATCTTATCAAAATTACAAAA 1205
Query 416 GATTGGGAAGAATCTTGGCCCTGGAAAAGAAGAAGACGCACACGAGTTTTTAAG 469
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1206 GATTGGGAAGCATCTTGGCCCTGGAAAAGAAGAAGACGCGCACGAGTTTTTAAG 1259
> ATMG01080.1 | Symbols: ATP9 | mitochondrial F0-ATPase subunit
9 | chrM:278649-279152 FORWARD LENGTH=504
Length=504
Score = 331 bits (179), Expect = 8e-90
Identities = 185/188 (98%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 956 GATGTTAGAAGGTGCAAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GATGTTAGAAGGTGCAAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGC 338
Query 1016 TGCTATCGGTATTGGAAACGTCTTCAGTTCTTTGATCCATTCTGTGGCGTGAAATCCATC 1075
||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 339 TGCTATCGGTATTGGAAACGTATTCAGTTCTTTGATTCATTCTGTGGCGCGAAATCCATC 398
Query 1076 ATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGC 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 ATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGC 458
Query 1136 ATTGTTTG 1143
||||||||
Sbjct 459 ATTGTTTG 466
> AT2G07671.1 | Symbols: | ATP synthase subunit C family protein
| chr2:3251665-3252113 REVERSE LENGTH=449
Length=449
Score = 331 bits (179), Expect = 8e-90
Identities = 185/188 (98%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 956 GATGTTAGAAGGTGCAAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 33 GATGTTAGAAGGTGCAAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGC 92
Query 1016 TGCTATCGGTATTGGAAACGTCTTCAGTTCTTTGATCCATTCTGTGGCGTGAAATCCATC 1075
||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 93 TGCTATCGGTATTGGAAACGTATTCAGTTCTTTGATTCATTCTGTGGCGCGAAATCCATC 152
Query 1076 ATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGC 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 ATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGC 212
Query 1136 ATTGTTTG 1143
||||||||
Sbjct 213 ATTGTTTG 220
> ATMG00040.1 | Symbols: ORF315 | ATP synthase subunit C family
protein | chrM:16844-17791 REVERSE LENGTH=948
Length=948
Score = 217 bits (117), Expect = 2e-55
Identities = 124/127 (98%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 956 GATGTTAGAAGGTGCAAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 33 GATGTTAGAAGGTGCAAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGC 92
Query 1016 TGCTATCGGTATTGGAAACGTCTTCAGTTCTTTGATCCATTCTGTGGCGT-GAAATCCAT 1074
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 93 TGCTATCGGTATTGGAAACGTATTCAGTTCTTTGATCCATTCTGTGGC-TCGAAATCCAT 151
Query 1075 CATTGGC 1081
|||||||
Sbjct 152 CATTGGC 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5