BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927852

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06050.1 | Symbols:  | Putative methyltransferase family pro...   220    3e-57


> AT5G06050.1 | Symbols:  | Putative methyltransferase family protein 
| chr5:1820132-1823771 FORWARD LENGTH=2312
Length=2312

 Score =  220 bits (119),  Expect = 3e-57
 Identities = 141/152 (93%), Gaps = 0/152 (0%)
 Strand=Plus/Plus

Query  1    TCACCCGGTTTTGGCTCCGTCTATGTCACCACCGCCGCCGCCAGATTCTGTTGAGCTGAC  60
            ||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||| 
Sbjct  289  TCACCCGATTTTGCCTCCGTCTTTGTCACCACCGCCGCCGCCAGATTCTGTTGAGTTGAA  348

Query  61   GGTGTTTGGGATCGTTAATGAGAACGGAAGAATGTCTGATGAGTTCCAGATTGGGGGTTA  120
            ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| | |||
Sbjct  349  GGTGTTTGGAATCGTTAATGAGAACGGAACAATGTCTGATGAGTTTCAGATTGGTGATTA  408

Query  121  CGACGCTGAGTCGGCGGAGACGTTGGGGAATC  152
            ||||| ||||||||||||||||||||||||||
Sbjct  409  CGACGTTGAGTCGGCGGAGACGTTGGGGAATC  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8752435074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5