BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927854

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03400.1 | Symbols:  | EF hand calcium-binding protein famil...   610    4e-174


> AT3G03400.1 | Symbols:  | EF hand calcium-binding protein family 
| chr3:808745-809158 REVERSE LENGTH=414
Length=414

 Score =  610 bits (330),  Expect = 4e-174
 Identities = 385/412 (93%), Gaps = 1/412 (0%)
 Strand=Plus/Plus

Query  29   GAATAACATGTCGATAAGTGAAATCTTCGAGAGGTTTGACAAGAACAAAGACGGTAAGAT  88
            |||||| |||||  ||||||| ||||||||||||||||||| || |||||| ||||||||
Sbjct  3    GAATAATATGTCTTTAAGTGATATCTTCGAGAGGTTTGACACGAGCAAAGATGGTAAGAT  62

Query  89   CTCATGGGAAGAGTTTCGTGACGCGATTCATGCTCTCTCTCCAGCTATTCCTTCAGACAA  148
            ||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct  63   CTCTTGGGAAGAGTTTCGTGACGCGATTCATGCTCTCTCTCCATCTATCCCTTCAGAAAA  122

Query  149  ACTGGTCGAGATGTTCATCCAGCTTGACACGAACGGAGATGGTCAGCTCGATGCGGCCGA  208
            ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct  123  ACTCGTCGAGATGTTCATCCAGCTTGACACGAATGGAGATGGTCAGGTCGATGCGGCCAA  182

Query  209  ATTCGCTTCGTGTATGGACCAAACTGCTCAGTCTAGTGGTGGCGACGTGGAAAAAGAGTT  268
            |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct  183  ATTCGCTTCGTGCATGGACCAAACAGCTCAGTCTAGTGGTGGTGACGTGGAAAAAGAGTT  242

Query  269  GAAGGATGCGTTCAAACTATATGATATTGATTGTGATGGGAAGATATCGGCCAATGAGTT  328
            ||||||||| || |||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct  243  GAAGGATGCTTTTAAACTATACGATATTAATTGTGATGGGAAGATATCGGCCAATGAGTT  302

Query  329  ACATGTGGTGATGACTCGGCTCGGAGAGAAGTGTACGGTTGAGAGCTGCGTAGGGATGGT  388
            ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct  303  ACATGTGGTGATGACTCGGCTTGGAGAGAAGTGTACGGTCGAGAGCTGCGTAGGGATGGT  362

Query  389  TCAAGCTATCGATGTAGATGGTGATGGTTATATTAGCTTTG-AGGAGTTTAA  439
            |||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct  363  TCAAGCTATCGATGTAGATGGTGATGGTTATATTAGATTCGTAGGAGTTTAA  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23258410061


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5