BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927856

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03410.1 | Symbols:  | EF hand calcium-binding protein famil...   621    2e-177


> AT3G03410.1 | Symbols:  | EF hand calcium-binding protein family 
| chr3:811324-811719 REVERSE LENGTH=396
Length=396

 Score =  621 bits (336),  Expect = 2e-177
 Identities = 377/397 (95%), Gaps = 2/397 (1%)
 Strand=Plus/Plus

Query  21   ATGTCTGCAAAACGTGTCTTCGAGAAGTTCGATAAGAACAAAGATGGTAAACTCA-CATT  79
            |||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct  1    ATGTCTGCAAAACGTGTCTTCGAGAAGTTCGATAAGAACAAAGACGGTAAACT-ATCATT  59

Query  80   AGACGAGTTTCGTGAAGCGGCTTTTGCTTTCTCTCCAAACTTTACTCAGGATGATATCGT  139
            ||||||||||||||||| |||| |||| ||||||||  ||||||||||||| ||||||||
Sbjct  60   AGACGAGTTTCGTGAAGTGGCTCTTGCGTTCTCTCCTTACTTTACTCAGGAAGATATCGT  119

Query  140  AAAGTTTTTCGAAGAGATCGACGTGGACGGTAACGGCGAGCTAAACGCCGAGGAGTTTAC  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  120  AAAGTTTTTCGAAGAGATCGACGTGGACGGTAACGGCGAGCTAAACGCCGACGAGTTTAC  179

Query  200  GTCGTGCATTGAGAAGATGTTGAAGGAAGTGTTTGTTTTTTGTGATGTTGACGGTGACGG  259
             |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  180  TTCGTGCATTGAGAAAATGTTGAAGGAAGTGTTTGTTTTCTGTGATGTTGACGGTGACGG  239

Query  260  GAAGATACCGGCCAGTGAGTCCTATGTGACTATGACTAGCCTCGGGAAGAAATGCACCGA  319
            ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct  240  GAAGATACCAGCCAGCGAGTCCTATGTGACTATGACTAGCCTCGGAAAGAAATTCACCGA  299

Query  320  GGAGACTTGTGCCGAAAAGGTCCGAGCGGCGGATGTAGATGGTGATGGCTATTTGAACTT  379
            |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  300  GGAGACTTCTGCCGAAAAGGTCCGAGCGGCGGATGTCGATGGTGATGGCTATTTGAACTT  359

Query  380  TGACGAGTTTATGTCTTTGGTTATTGGTGACATATAA  416
            ||||||||||||| |||||||||||||||||||||||
Sbjct  360  TGACGAGTTTATGGCTTTGGTTATTGGTGACATATAA  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20710312588


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5