BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927858
Length=292
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03430.1 | Symbols: | Calcium-binding EF-hand family protei... 436 4e-122
AT5G17480.1 | Symbols: APC1, PC1 | pollen calcium-binding prote... 239 1e-62
> AT3G03430.1 | Symbols: | Calcium-binding EF-hand family protein
| chr3:814473-814732 FORWARD LENGTH=260
Length=260
Score = 436 bits (236), Expect = 4e-122
Identities = 253/261 (97%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 13 TACAAACAATGGCTGATGCAACAGAAAAAGCTGAGCATGACCGTATTTTCAAGAAATTTG 72
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TACAAACAATGGCTGACGCAACAGAAAAAGCTGAGCATGACCGTATTTTCAAGAAATTTG 60
Query 73 ATGCTAATGGAGATGGAAAAATCTCTGCGGCCGAGCTTGGAGATGCTCTGAAGAACCTTG 132
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 61 ATGCTAATGGAGATGGAAAAATCTCAGCGGCCGAGCTTGGAGATGCTCTCAAGAACCTTG 120
Query 133 GCTCGGTCACACACGAGGACATTAAGCGTATGATGGCCGAGATTGATACCGATGGCGATG 192
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 GCTCGGTCACACACGAGGACATTAAGCGTATGATGGCAGAGATTGATACCGATGGCGATG 180
Query 193 GATACATCTCGTACCAAGAATTT-TCTGATTTCGCAAGTGCCAATCGTGGTCTTATGAAA 251
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 181 GATACATCTCGTACCAAGAATTCAT-TGATTTCGCAAGTGCCAATCGTGGTCTTATGAAA 239
Query 252 GACGTCGCCAAGATTTTCTAA 272
||||| |||||||||||||||
Sbjct 240 GACGTTGCCAAGATTTTCTAA 260
> AT5G17480.1 | Symbols: APC1, PC1 | pollen calcium-binding protein
1 | chr5:5762689-5762940 FORWARD LENGTH=252
Length=252
Score = 239 bits (129), Expect = 1e-62
Identities = 213/254 (84%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 21 ATGGCTGATGCAACAGAAAAAGCTGAGCATGACCGTATTTTCAAGAAATTTGATGCTAAT 80
|||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGATGCAACGGAGAAAGCCGAGCACGACCGTATTTTCAAGAAATTTGATGCTAAT 60
Query 81 GGAGATGGAAAAATCTCTGCGGCCGAGCTTGGAGATGCTCTGAAGA-ACCTTGGCTCGGT 139
|| || |||||||| || || ||||| || | ||| ||||| |||| || |||| |||||
Sbjct 61 GGTGACGGAAAAATTTCAGCAGCCGAACTCGAAGAAGCTCTTAAGACAC-TTGGTTCGGT 119
Query 140 CACA-CACGAGGACATTAAGCGTATGATGGCCGAGATTGATACCGATGGCGATGGATACA 198
||| | || ||| | || ||||||||||| || |||||||| ||||| |||||| |||
Sbjct 120 AACAGCT-GATGACGTCAAACGTATGATGGCTGAAATTGATACTGATGGTGATGGAAACA 178
Query 199 TCTCGTACCAAGAATTTTCTGATTTCGCAAGTGCCAATCGTGGTCTTATGAAAGACGTCG 258
| ||||| |||||||| ||||||| ||| ||||||||||||| |||||||| || || |
Sbjct 179 TATCGTATCAAGAATTCACTGATTTTGCAGGTGCCAATCGTGGACTTATGAAGGATGTTG 238
Query 259 CCAAGATTTTCTAA 272
|||| |||||||||
Sbjct 239 CCAAAATTTTCTAA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13471756732
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5