BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927862
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03460.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1280 0.0
> AT3G03460.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G17510.1);
Has 19732 Blast hits to 8747 proteins in 456 species: Archae
- 0; Bacteria - 449; Metazoa - 7438; Fungi - 2099; Plants
- 1550; Viruses - 53; Other Eukaryotes - 8143 (source: NCBI
BLink). | chr3:822937-824546 REVERSE LENGTH=1258
Length=1258
Score = 1280 bits (693), Expect = 0.0
Identities = 890/978 (91%), Gaps = 42/978 (4%)
Strand=Plus/Plus
Query 5 CAGCAGCAACAGGCGGCGATGTCGAGGTTTCCGCCGAACGCCGACGCTCATCTCCGGCCA 64
||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 182 CAGCAACAACAGGCGGCGATGTCGATGTTTCCGCCGAACGCTGACGCTCATCTCCGGCCA 241
Query 65 CCGGGTTTGATTCCGAACCGACCCGTTAACCCGTTTCTTCAGAACGCT-AACCCTAACCC 123
||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 242 CCGGGGTTGATTCCGAACCGACCCGTTAACCCGTTTCTTCAGAACG-TGAACCCTAACCC 300
Query 124 TAATTTGATTCAACAAGCCAATAAATTTCAG---CA--A-CAGCAACAGATGATGATGAT 177
||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 301 TAATTTGATTCAACAAGCCAATAAATTTCAGCAACAGCAGCAGCAACAGATGATGATGAT 360
Query 178 GATG---------------CAACAACAGCAACAGCAGAAATTGATGCGTCCATCGAATCA 222
|||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 GATGCAACAACAACAACTACAACAACAACAACAGCAGAAATTGATGCGTCCATCGAATCA 420
Query 223 ATTGGAGATACAATTCGCTTACCAAGACGCTTGGCGTGTTTGCCATCCTGATTTCAAGCG 282
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 421 ATTGGAGATACAATTCGCTTACCAAGACGCTTGGCGTGTTTGTCATCCTGATTTCAAACG 480
Query 283 ACCTTTCGCTTCTCTCGAAGACGCTTGTGAAAGATTGTTACCTTATCACGTCGTAGCAGA 342
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 481 ACCTTTCGCTTCTCTCGAAGACGCTTGTGAAAGATTGTTACCTTATCATGTTGTAGCAGA 540
Query 343 TTACGAAGCAGAAGAAGATGATAGTATCCTCT-ATTCAGACACAACAAACCAGGCGCTAC 401
|||||||||||||||||||||||||||| | | ||||| ||||||||| |||| ||||||
Sbjct 541 TTACGAAGCAGAAGAAGATGATAGTATCTT-TGATTCAAACACAACAAGCCAGACGCTAC 599
Query 402 CCCGCTGTCAGCTATGGGACAACAACATTGCAGCCAAAGTCGCAGAATTCACGGCGACAT 461
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 600 CCCGCTGTCAGCAATGGGACAACAACATTGCAGCCAAAGTTGCAGAATTCACGGCGACAT 659
Query 462 TTGAGGAACAAGTCCAAGCTTTCAACAGGATAACTCAGAAGAGAAGGGATGGCGTCAGAG 521
|||||| |||||||||||||||| ||||||||| ||| |||||||| ||||| | |||||
Sbjct 660 TTGAGGGACAAGTCCAAGCTTTCGACAGGATAATTCAAAAGAGAAGCGATGGAGACAGAG 719
Query 522 CTGAGGAAATGCTGATGATGGAACAATTTTTGCTCCAA-GACGAGAGAAACGCATGTATT 580
|||||||| |||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 720 TTGAGGAAAGGCTGATGATGGAACAAGTTTTGCTC-AATGACGAGAGAAACGCATGTATC 778
Query 581 GAACTGGATAGGGAGATGAAAGCTCAGGATGCGAGGTTAAGAATGGCGGCTTTTGCTCAA 640
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 779 CAGCTGGATAGGGAGATGAAAGCTCAGGATGCGAGGTTAAGAATGGCGGCTTTGGCTCAA 838
Query 641 GCAGCAGGACAAGCAAGGGCAGCAGATTCTCAACAATCTCATGCCGAGATGATGGCTCGT 700
|||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 839 GCAGCAGGACAAGCAAGGGCAGAAGAGTCTCAACAGTCTCATGCCGAGATGATGGCTCGT 898
Query 701 AACCCGTTGAGAGCTAATGCGATTGGGAATCATGGAGAACAAGGACGTAACATGAACCCT 760
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 899 AACCCGTTGAGAGCTAATGCGATTGGGAATCATGGAGAACAGGGGCGTAACATGAACCCT 958
Query 761 AATGAGATGATGATGCTGATGAATGGATGGGGGAACAATAA---------TA---GCCAG 808
|||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 959 AATGAGATGATGTTGCTGATGAATGGATGGGGGAACAATAACAACAACAATAATAGCCAG 1018
Query 809 AAAGAAGAGAAGGAACCACTAGAAGATTTCTTGAATGATGAGGAAAATGAAAACGGGGAA 868
|| ||||||||||||||| |||||||||||||||||||||| ||||||||||| || |||
Sbjct 1019 AAGGAAGAGAAGGAACCATTAGAAGATTTCTTGAATGATGAAGAAAATGAAAATGGTGAA 1078
Query 869 CATGAGAACTGGCGACGAACTGGGGATTTTGATTTGAATACTCGGTAATATGGAACCAAG 928
|||||||| |||||| ||| |||||||||||||||||||| ||||||| ||| ||||| |
Sbjct 1079 CATGAGAAGTGGCGAAGAAGTGGGGATTTTGATTTGAATATTCGGTAA-ATGAAACCATG 1137
Query 929 ACTCAGAAtttt-ttttG 945
||||||| |||| |||||
Sbjct 1138 ACTCAGA-TTTTCTTTTG 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5