BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927862 Length=945 Score E Sequences producing significant alignments: (Bits) Value AT3G03460.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1280 0.0 > AT3G03460.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17510.1); Has 19732 Blast hits to 8747 proteins in 456 species: Archae - 0; Bacteria - 449; Metazoa - 7438; Fungi - 2099; Plants - 1550; Viruses - 53; Other Eukaryotes - 8143 (source: NCBI BLink). | chr3:822937-824546 REVERSE LENGTH=1258 Length=1258 Score = 1280 bits (693), Expect = 0.0 Identities = 890/978 (91%), Gaps = 42/978 (4%) Strand=Plus/Plus Query 5 CAGCAGCAACAGGCGGCGATGTCGAGGTTTCCGCCGAACGCCGACGCTCATCTCCGGCCA 64 ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 182 CAGCAACAACAGGCGGCGATGTCGATGTTTCCGCCGAACGCTGACGCTCATCTCCGGCCA 241 Query 65 CCGGGTTTGATTCCGAACCGACCCGTTAACCCGTTTCTTCAGAACGCT-AACCCTAACCC 123 ||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 242 CCGGGGTTGATTCCGAACCGACCCGTTAACCCGTTTCTTCAGAACG-TGAACCCTAACCC 300 Query 124 TAATTTGATTCAACAAGCCAATAAATTTCAG---CA--A-CAGCAACAGATGATGATGAT 177 ||||||||||||||||||||||||||||||| || | |||||||||||||||||||| Sbjct 301 TAATTTGATTCAACAAGCCAATAAATTTCAGCAACAGCAGCAGCAACAGATGATGATGAT 360 Query 178 GATG---------------CAACAACAGCAACAGCAGAAATTGATGCGTCCATCGAATCA 222 |||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 361 GATGCAACAACAACAACTACAACAACAACAACAGCAGAAATTGATGCGTCCATCGAATCA 420 Query 223 ATTGGAGATACAATTCGCTTACCAAGACGCTTGGCGTGTTTGCCATCCTGATTTCAAGCG 282 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 421 ATTGGAGATACAATTCGCTTACCAAGACGCTTGGCGTGTTTGTCATCCTGATTTCAAACG 480 Query 283 ACCTTTCGCTTCTCTCGAAGACGCTTGTGAAAGATTGTTACCTTATCACGTCGTAGCAGA 342 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 481 ACCTTTCGCTTCTCTCGAAGACGCTTGTGAAAGATTGTTACCTTATCATGTTGTAGCAGA 540 Query 343 TTACGAAGCAGAAGAAGATGATAGTATCCTCT-ATTCAGACACAACAAACCAGGCGCTAC 401 |||||||||||||||||||||||||||| | | ||||| ||||||||| |||| |||||| Sbjct 541 TTACGAAGCAGAAGAAGATGATAGTATCTT-TGATTCAAACACAACAAGCCAGACGCTAC 599 Query 402 CCCGCTGTCAGCTATGGGACAACAACATTGCAGCCAAAGTCGCAGAATTCACGGCGACAT 461 |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 600 CCCGCTGTCAGCAATGGGACAACAACATTGCAGCCAAAGTTGCAGAATTCACGGCGACAT 659 Query 462 TTGAGGAACAAGTCCAAGCTTTCAACAGGATAACTCAGAAGAGAAGGGATGGCGTCAGAG 521 |||||| |||||||||||||||| ||||||||| ||| |||||||| ||||| | ||||| Sbjct 660 TTGAGGGACAAGTCCAAGCTTTCGACAGGATAATTCAAAAGAGAAGCGATGGAGACAGAG 719 Query 522 CTGAGGAAATGCTGATGATGGAACAATTTTTGCTCCAA-GACGAGAGAAACGCATGTATT 580 |||||||| |||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct 720 TTGAGGAAAGGCTGATGATGGAACAAGTTTTGCTC-AATGACGAGAGAAACGCATGTATC 778 Query 581 GAACTGGATAGGGAGATGAAAGCTCAGGATGCGAGGTTAAGAATGGCGGCTTTTGCTCAA 640 | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 779 CAGCTGGATAGGGAGATGAAAGCTCAGGATGCGAGGTTAAGAATGGCGGCTTTGGCTCAA 838 Query 641 GCAGCAGGACAAGCAAGGGCAGCAGATTCTCAACAATCTCATGCCGAGATGATGGCTCGT 700 |||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||| Sbjct 839 GCAGCAGGACAAGCAAGGGCAGAAGAGTCTCAACAGTCTCATGCCGAGATGATGGCTCGT 898 Query 701 AACCCGTTGAGAGCTAATGCGATTGGGAATCATGGAGAACAAGGACGTAACATGAACCCT 760 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 899 AACCCGTTGAGAGCTAATGCGATTGGGAATCATGGAGAACAGGGGCGTAACATGAACCCT 958 Query 761 AATGAGATGATGATGCTGATGAATGGATGGGGGAACAATAA---------TA---GCCAG 808 |||||||||||| |||||||||||||||||||||||||||| || ||||| Sbjct 959 AATGAGATGATGTTGCTGATGAATGGATGGGGGAACAATAACAACAACAATAATAGCCAG 1018 Query 809 AAAGAAGAGAAGGAACCACTAGAAGATTTCTTGAATGATGAGGAAAATGAAAACGGGGAA 868 || ||||||||||||||| |||||||||||||||||||||| ||||||||||| || ||| Sbjct 1019 AAGGAAGAGAAGGAACCATTAGAAGATTTCTTGAATGATGAAGAAAATGAAAATGGTGAA 1078 Query 869 CATGAGAACTGGCGACGAACTGGGGATTTTGATTTGAATACTCGGTAATATGGAACCAAG 928 |||||||| |||||| ||| |||||||||||||||||||| ||||||| ||| ||||| | Sbjct 1079 CATGAGAAGTGGCGAAGAAGTGGGGATTTTGATTTGAATATTCGGTAA-ATGAAACCATG 1137 Query 929 ACTCAGAAtttt-ttttG 945 ||||||| |||| ||||| Sbjct 1138 ACTCAGA-TTTTCTTTTG 1154 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46215415240 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5