BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927869
Length=1616
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03520.1 | Symbols: NPC3 | non-specific phospholipase C3 | c... 2556 0.0
> AT3G03520.1 | Symbols: NPC3 | non-specific phospholipase C3 |
chr3:837877-840624 REVERSE LENGTH=1780
Length=1780
Score = 2556 bits (1384), Expect = 0.0
Identities = 1528/1599 (96%), Gaps = 4/1599 (0%)
Strand=Plus/Plus
Query 7 AAAAA-TAAAGAGAAGTATGGTGGAGGAAACGAGCTCTGGTGGTGGCTCTTCGTCTTCTC 65
||||| |||| |||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 98 AAAAAGTAAA-AGAAGTATGGTGGAGGAAACGAGCTCTGGTGGTGGCTCATCGGCTTCTC 156
Query 66 CTATCAAAACCGTCGTCGTGTTGGTTCAGGAGAACAGGTCTTTCGACCACATGTTAGGTT 125
| ||||||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 157 CGATCAAAACCATCGTCGTTTTGGTTCAGGAGAACAGGTCGTTCGATCACATGTTAGGTT 216
Query 126 GGTTTAAGGAACTAAACCCGGAAATCGATGGAGTATCCGAATCCGAACCAAGATCCAACC 185
|||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 217 GGTTCAAGGAGCTTAACCCAGAAATCGATGGAGTATCCGAATCCGAACCAAGATCCAACC 276
Query 186 CAATTTCTACATCTGACCCGAACTCTGCTCAAGTCTTCTTCGGCAAAGAATCTCAGAACA 245
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 277 CACTTTCTACATCTGACCCGAACTCTGCTCAAATCTTCTTCGGCAAAGAATCTCAGAACA 336
Query 246 TTGATCCTGATCCCGGTCACTCTTTTCAGGCGATCTACGAACAAGTGTTCGGAAAACCAT 305
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 337 TTGATCCTGATCCCGGTCACTCTTTTCAGGCGATCTACGAACAAGTGTTTGGAAAACCAT 396
Query 306 TCAGCGACGAGAGTCCGTACCCGTATCCGAAAATGAACGGGTTCGTACAAAACGCAGAGG 365
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 397 TCAGCGACGAGAGTCCGTACCCGGATCCGAAGATGAACGGGTTCGTACAAAACGCAGAGG 456
Query 366 CGATAACAAAAGGGATGTCGGAGAAAGTAGTGATGCAAGGGTTTCCGCCGGAGAAACTTC 425
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 457 CGATAACAAAAGGGATGTCGGAGAAAGTAGTGATGCAAGGTTTTCCGCCGGAGAAACTTC 516
Query 426 CGGTATTCAAGGAACTAGTTCAAGAATTCGCCGTCTGCGATCGGTGGTTCTCGTCGTTGC 485
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 517 CGGTATTCAAGGAACTAGTTCAAGAATTCGCTGTCTGCGATCGGTGGTTCTCGTCGTTGC 576
Query 486 CGTCGTCGACGCAGCCTAACCGACTCTACGTCCACGCAGCGACATCAAACGGTGCGTTTA 545
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 577 CCTCGTCCACGCAGCCTAACCGACTCTACGTCCACGCGGCGACATCAAACGGTGCGTTTA 636
Query 546 GTAATGACACTAACACACTTGTCCGTGGGTTTCCTCAGAGGACAGTCTTCGAATCACTTG 605
|||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 637 GTAATGACACTAACACGCTTGTTCGTGGCTTTCCTCAGAGGACAGTGTTCGAATCACTTG 696
Query 606 AAGAGAGTGGTTTCACGTTTGGGATTTATTACCAATCTTTTCCTAATTGCCTCTTTTACA 665
||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 697 AAGAGAGCGGTTTCACATTTGGAATTTATTACCAATCCTTTCCTAATTGCCTCTTTTACA 756
Query 666 GGAACATGAGGAAATTGAAGTACGTGGACAACTTTCATCAATACCACTTAAGCTTCAAGA 725
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 757 GGAACATGAGGAAACTGAAGTACGTGGACAACTTCCATCAATACCACTTAAGCTTCAAGA 816
Query 726 GGCATTGCAAAGAAGGGAAGCTTCCAAACTATGTTGTCATAGAACCAAGATACTTCAACA 785
|||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |
Sbjct 817 GGCATTGCAAAGAAGGGAAGCTTCCAAACTATGTGGTTATAGAACCAAGGTACTTCAAGA 876
Query 786 TTTTGTCGGCTCCAGCAAATGATGACCATCCCAAAAACGACGTTGTTGAAGGCCAAAACC 845
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 877 TTTTGTCGGCTCCAGCTAATGATGACCATCCCAAAAACGACGTCGTTGAAGGCCAAAATC 936
Query 846 TAGTCAAAGAGATCTACGAAGCCTTAAGAGCTAGTCCTCAGTGGAACGAGATTCTCTTCG 905
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TAGTCAAAGAAATCTACGAAGCCTTAAGAGCTAGTCCTCAGTGGAACGAGATTCTCTTCG 996
Query 906 TTGTTGTTTATGATGAACATGGTGGTTACTATGACCATGTCCCTACTCCAGTCACTGGTG 965
|||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||
Sbjct 997 TTGTTGTTTATGATGAACATGGTGGTTATTATGACCACGTCCCTACTCCAGTCATTGGTG 1056
Query 966 TCCCAAATCCTGATGGTCTTGTTGGACCCGAGCCCTATAACTTTAAGTTTGACCGGCTTG 1025
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1057 TCCCAAATCCTGATGGTCTAGTTGGACCTGAGCCCTATAACTTTAAGTTTGACCGGCTTG 1116
Query 1026 GTGTTAGGGTTCCTGCATTGCTAATCTCGCCTTGGATCGAACCTAAAACGGTGTTACACG 1085
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1117 GTGTTAGGGTTCCTGCTTTGCTAATCTCGCCTTGGATCGAACCTGGAACGGTGTTACACG 1176
Query 1086 AGCCAAACGGACCAGAGCCAACGTCGCAGTTCGAGCATTCATCAATTCCGGCAACACTGa 1145
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1177 AGCCAAATGGACCAGAGCCAACGTCGCAGTTCGAACATTCATCAATTCCGGCAACACTGA 1236
Query 1146 aaaaaaTATTCAACCTCAAGAGCTTTCTTACAAAGCGTGATGAATGGGCTGGAACATTCG 1205
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1237 AGAAAATATTCAACCTCAAGAGCTTTCTTACAAAGCGTGACGAATGGGCTGGAACACTCG 1296
Query 1206 ATGCTGTCATCAACCGGACCAGCCCAAGGACAGACTGCCCTGTTACATTACCGGAACTTC 1265
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 1297 ATGCTGTCATCAACCGGACCAGCCCAAGGACGGACTGCCCCGTCACATTACCGGAACTTC 1356
Query 1266 CAAGGGCAAGAGACATAGACATTGAAACACAAGAAGAAGACGAAGATCTCACTGATTTTC 1325
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1357 CTAGGGCAAGAGACATAGACATTGGAACACAAGAAGAAGACGAAGATCTCACTGATTTTC 1416
Query 1326 AAATCGAATTGATTCAAGCAGCGGCTGTACTAAAGGGAGATCATATCAAAGACATTTACC 1385
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1417 AAATCGAACTGATTCAAGCAGCGGCTGTACTAAAAGGAGATCATATCAAAGACATTTACC 1476
Query 1386 CGTTTAAGCTCGCGGATAACATGAAGGTTTTGGATGCGGCTCGGTACGTAGAAGAAGCTT 1445
||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1477 CGTTTAAGCTCGCAGATAAAATGAAGGTTTTGGATGCGGCTAGGTACGTAGAAGAAGCTT 1536
Query 1446 TCACTAGATTCCATGGTGAGTCCAAGAAGGCTAAAGAAGGAGGCCGTGATGAGCATGAGA 1505
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1537 TCACTAGATTCCATGGTGAGTCCAAGAAGGCTAAAGAAGAAGGCCGTGATGAGCATGAGA 1596
Query 1506 TCGTTGATCTTTCTAAAGGATCTACTCGTCACTCGACTCCTAAATCTTTCGTTCAGAAGT 1565
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1597 TCGTTGATCTTTCTAAAGGATCTACTCGTCACTCGACTCCTAAGTCTTTTGTTCAGAAGT 1656
Query 1566 TTTTCTCTTGTTTGATTTGTGATAATTGAAT-TTGAGTT 1603
| ||||| ||||||||||||||||||||| | |||||||
Sbjct 1657 TATTCTCGTGTTTGATTTGTGATAATTGA-TCTTGAGTT 1694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79818866550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5