BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927883
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03730.1 | Symbols: | F-box family protein with a domain of... 329 3e-89
AT4G12810.1 | Symbols: | F-box family protein | chr4:7522831-7... 267 2e-70
AT3G03720.1 | Symbols: CAT4 | cationic amino acid transporter 4... 255 5e-67
AT3G03726.1 | Symbols: | Protein of unknown function (DUF295) ... 183 2e-45
> AT3G03730.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr3:935139-936320 REVERSE LENGTH=1182
Length=1182
Score = 329 bits (178), Expect = 3e-89
Identities = 370/459 (81%), Gaps = 28/459 (6%)
Strand=Plus/Plus
Query 24 ATGAGCGAGTCCGAGGAAAAGACATGCAACGACGATTCAAAGCAGCCGACACTTGTCCTA 83
|||||||| ||| | ||||||||||| | ||||| | |||||||| | |||||||||
Sbjct 1 ATGAGCGATTCCAACAAAAAGACATGC-A--ACGATGCGAAGCAGCCAATACTTGTCCTG 57
Query 84 GACCTGATTATATCGATCTTGCAACGCTTGAGTTTTTCT-TATTTTCATAGAGCCAGATG 142
||| || ||| || | ||||| |||||||||| ||| | |||||||| |||| |||||
Sbjct 58 GACTTGGTTAGATTGGTCTTGGAACGCTTGAG-CTTTGTAGATTTTCATCGAGCTAGATG 116
Query 143 CGTTTCTACAGAATGGTATTACGCTTCGAAATCATGGC---CGA-G-CCTGATAGTAACA 197
|||||| ||| |||||||| |||||||||||||| || || | | || ||||
Sbjct 117 TGTTTCTTCAGTATGGTATTCCGCTTCGAAATCAT-GCATTGGAGGAACAAAT-CCAACA 174
Query 198 ACTCCATGGATCATCATGTTTCCATACGAAGATCCGAAAAACAGAAACAATGATTCATCA 257
|||||||||||||| | |||||| ||||| || | ||||| ||||| || | ||
Sbjct 175 GCTCCATGGATCATCCTCTTTCCAAACGAACATGTG-AAAAC--CAACAACGA-T--TCG 228
Query 258 TGTAAGT-TTTTCGATCCTCGTGA-CAATAGTTCTTACACATTAAGAGATCTCGGGATTA 315
||||||| || ||||||||||| | ||||||| |||||| |||||||||||||| ||
Sbjct 229 TGTAAGTCAATT-GATCCTCGTGATC-ATAGTTCATACACAATAAGAGATCTCGGGTTTG 286
Query 316 ATATGGCTACGAGTCGTTGTTTGACGAGTTCCGGTAGCTGGTTCCTTATGTTAGACGATA 375
|||||| || ||||||||||||| | |||||||||||||||||||||||||||||| |||
Sbjct 287 ATATGGTTAGGAGTCGTTGTTTGGCAAGTTCCGGTAGCTGGTTCCTTATGTTAGACCATA 346
Query 376 AA-CTAGATTTTCACCTTTTGAATCTGTTTACTCGAGAGATGA-TTCCTCTTCCGCCTCT 433
|| || |||||||| || |||||||| ||||||||||||| || ||||||||||| ||||
Sbjct 347 AAACT-GATTTTCATCTCTTGAATCTATTTACTCGAGAGA-GAATTCCTCTTCCGTCTCT 404
Query 434 CGAATCAATCGATGGATTTCCGATGGAACTTT-TCAGAA 471
|||||||| |||||||| | |||| || ||| | ||||
Sbjct 405 GGAATCAATTGATGGATTGCAGATG-AAGTTTGTGAGAA 442
> AT4G12810.1 | Symbols: | F-box family protein | chr4:7522831-7523979
REVERSE LENGTH=1149
Length=1149
Score = 267 bits (144), Expect = 2e-70
Identities = 341/432 (79%), Gaps = 29/432 (7%)
Strand=Plus/Plus
Query 23 GATGAGCGAGTCCGAGGAAAAGACATGCAACGACGATTC-AAAGCAGCCGACACTTGTCC 81
||||||||| |||||| ||||||||| ||| || ||||| ||| || ||| ||||| ||
Sbjct 27 GATGAGCGATTCCGAGAAAAAGACATTCAATGAAGATTCGAAA-CATTCGATACTTG-CC 84
Query 82 -TAGACCTGATTATATCGATCTTGCAACGCTTGAGTTTTTCTT-ATTTTCATAGAGCCAG 139
| |||||| | | || ||||||| |||||||||| ||| || |||||||| |||| ||
Sbjct 85 GTGGACCTGGTAAGATTGATCTTGGAACGCTTGAG-CTTTGTTGATTTTCATCGAGCGAG 143
Query 140 ATGCGTTTCTACAGA-ATGGTATTA-CGCTT-C-GAA-A-TCA-TGGCCG-AGCCTGATA 191
|||||||||| || | |||||| || |||| | || | ||| ||| | | | ||
Sbjct 144 ATGCGTTTCTTCA-ATATGGTA-TATTGCTTCCAAAACAGTCATTGG-AGTA-ACAAAT- 198
Query 192 GTAACAACTCCATGGATCATCATGTTTCCATACGAAGAT-CCGAAAAACAGAAACAATGA 250
||||||||||||| ||||| | |||||| | | |||| |||| | | ||| || ||
Sbjct 199 CCAACAACTCCATGGCTCATCCTATTTCCAAAAGGAGATGTGGAAATA-A-AAA-AA-GA 254
Query 251 TTCATCATGTAAGTTTTTCGATCCTCGTGACAATAGTTCTTACACATTAAGAGATCTCGG 310
| ||||||||||| | |||||||| ||| || | | |||| | ||||||| |||||
Sbjct 255 -T--TCATGTAAGTTGTACGATCCTCATGAAAACAAAACCTACATAGTAAGAGACCTCGG 311
Query 311 GATTAATATGGCTACGAGTCGTTGTTTGACGAGTTCCGGTAGCTGGTTCCTTATGTTAGA 370
| || || | | |||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 312 GTTTGATTTAGTTACGAGTCGTTGTTTGGCTAGTTCCGGTAGCTGGTTCCTTATGTTAGA 371
Query 371 CGATA-AACTAGATTTTCACCTTTTGAATCTGTTTACTCGAGAGATGATTCCTCTTCCGC 429
| ||| |||| || ||||| |||||||||||||||||||||| || |||||||||||||
Sbjct 372 CCATAGAACT-GAATTTCATCTTTTGAATCTGTTTACTCGAGTGAGGATTCCTCTTCCGT 430
Query 430 CTCTCGAATCAA 441
|||| |||||||
Sbjct 431 CTCTAGAATCAA 442
> AT3G03720.1 | Symbols: CAT4 | cationic amino acid transporter
4 | chr3:925612-930974 REVERSE LENGTH=2664
Length=2664
Score = 255 bits (138), Expect = 5e-67
Identities = 217/254 (85%), Gaps = 10/254 (4%)
Strand=Plus/Plus
Query 511 acaaaaaaGGAGATGATGACAACAATAGCTGGAAAGTGCTTGAACCTTTGAA-GAAACAA 569
|||| ||| | || |||||||| |||| |||||||||| || ||||||| || ||| |||
Sbjct 95 ACAAGAAA-G-GA-GATGACAAGAATAACTGGAAAGTGATTCAACCTTT-AATGAATCAA 150
Query 570 CAATACGTAGATATGGTGTGTAAAGAAAGCAAGCTTTACGTGCTTAGTGATACTCGA-GT 628
| || ||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 151 CGATGCGTGGATATGGTGTGTAAAGAAAGCAAGCTTTACGTGCTTACTGATACTC-ACGT 209
Query 629 CACTGTTCTTGATTTCTCCCGTGATGATTCTCCTCCAATAAAATGTGCAAGTTTCAAATC 688
|||||||||||||||||||| | |||| || |||||||| |||||||||||||||||||
Sbjct 210 CACTGTTCTTGATTTCTCCCACGCTGATGCTTCTCCAATACAATGTGCAAGTTTCAAATC 269
Query 689 TCTGGATTATCCT--T-ATTCGTCTCACGACAAGAATCTTGTTGTGACTTTGTCTGTACA 745
|| | ||||| | | |||||| | || ||||||||||| |||||||||||| | |||
Sbjct 270 TCCGAATTATGGTAATGATTCGTTTTGCGGCAAGAATCTTGCTGTGACTTTGTCAGGACA 329
Query 746 AGTTTTGATCGTTA 759
||||||||||||||
Sbjct 330 AGTTTTGATCGTTA 343
> AT3G03726.1 | Symbols: | Protein of unknown function (DUF295)
| chr3:933341-934464 REVERSE LENGTH=870
Length=870
Score = 183 bits (99), Expect = 2e-45
Identities = 150/173 (87%), Gaps = 10/173 (6%)
Strand=Plus/Plus
Query 512 caaaaaaGGAGATGATGACAACAATAGCTGGAAAGTGCTTGAACCTTTGAAGAAACAACA 571
||| || ||||||| || |||||||||||||||||| |||| ||||| ||||| ||||
Sbjct 429 CAAGAATGGAGATG--GA-AACAATAGCTGGAAAGTGATTGAGCCTTTAAAGAATCAACG 485
Query 572 ATACGTAGATATGGTGTGTAAAGAAAGCAAGCTTTACGTGCTTAGTGATACTCGAGTCAC 631
|| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 486 ATGCGTTGATATGGTGTGTAAAGAAAGCAAGCTTTACGTGTTTAGTGATACTCGAGTCAC 545
Query 632 TGT-TCTTGATTTCTCCCGT-GATGATTCTCCTCCAATAAAATGTGCAAGTTT 682
||| | |||||||||||||| | ||||||||| ||| ||||||||| |||
Sbjct 546 TGTGT-TTGATTTCTCCCGTAG-TGATTCTCC---AATGGAATGTGCAATTTT 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52810973340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5