BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927888
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03630.1 | Symbols: CS26 | cysteine synthase 26 | chr3:87792... 1951 0.0
> AT3G03630.1 | Symbols: CS26 | cysteine synthase 26 | chr3:877928-880446
REVERSE LENGTH=1634
Length=1634
Score = 1951 bits (1056), Expect = 0.0
Identities = 1192/1258 (95%), Gaps = 7/1258 (1%)
Strand=Plus/Plus
Query 1 AAACCTCACTGGCGACGGAAAATGGCATTCTCGTCTCCTTCGCTCCGTCTTCTTCCTCAG 60
||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 26 AAACCTCGCCGGCGACGGAAAATGGCTTTCGCGTCTCCTTCGCTCCGTCTTCTTCCTCAG 85
Query 61 TCTCCATTCCATCTAATAGCATCAAAACGACACCGTTTCAGTGA-TGCGAAACCCTCACT 119
||||| || || |||| |||| |||| ||||||||||||| | |||||||| ||||||
Sbjct 86 TCTCCGTTAGGTCGAATAACATCTAAACTACACCGTTTCAGT-ACTGCGAAACTCTCACT 144
Query 120 CTTCTCCTTTAACCATGAATCTTCATCGTCTTTCATTCTCAGAACTCCGGTATCTTCTTC 179
|||||||||| ||||||| |||||||| ||||| | |||||||||||||| |||||
Sbjct 145 CTTCTCCTTTCACCATGATTCTTCATCTTCTTTGGCTGTCAGAACTCCGGTA---TCTTC 201
Query 180 CTTCGTCGTCGGTGCGGTCTCCGGAAAATCCTCTACCGGGACGAAATCGAAATCCAAAAC 239
|||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 202 CTTCGTCGTCGGCGCTATCTCCGGAAAATCCTCTACCGGAACGAAATCGAAATCCAAAAC 261
Query 240 CAAACGGAAACCACCTCCTCCTCCGCCAGTTACTACTGTGGCTGAAGAGCAAGACATTGC 299
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 262 CAAACGGAAACCACCTCCTCCTCCGCCAGTCACTACTGTGGCTGAAGAGCAACACATTGC 321
Query 300 CGAGTCAGAAACAGTCAACATTGCCGAAGATGTCACTCAATTGATTGGAAGCACACCAAT 359
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 TGAGTCAGAGACAGTCAACATTGCCGAAGATGTCACTCAATTGATTGGAAGCACACCAAT 381
Query 360 GGTGTATCTCAATAGAGTCACTGATGGATGTTTGGCTGACATTGCTGCCAAGCTCGAATC 419
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 382 GGTCTATCTCAATAGAGTCACAGATGGTTGTTTGGCTGACATTGCTGCCAAGCTCGAATC 441
Query 420 AATGGAGCCCTGTAGAAGCGTCAAGGATAGGATCGGTCTGAGCATGATCAATGAGGCAGA 479
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 442 AATGGAGCCCTGTAGAAGCGTCAAAGATAGGATCGGTCTGAGCATGATCAACGAGGCAGA 501
Query 480 AGACAGCGGAGCTATAAGTCCCAGGAAGACTGTGTTAGTAGAACCAACAACCGGAAACAC 539
| ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 502 AAACAGCGGAGCTATAACTCCGAGGAAGACTGTATTAGTAGAACCAACAACCGGAAACAC 561
Query 540 TGGCCTCGGGATTGCTTTTGTGGCTGCAGCTAAAGGCTACAAGCTTATCGTGACAATGCC 599
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 562 TGGCCTTGGGATTGCATTTGTGGCTGCAGCTAAAGGCTACAAGCTTATAGTGACAATGCC 621
Query 600 AGCTTCTATCAATGTTGAAAGGAGGATGCTTTTACGTGCACTAGGAGCAGAGATTGTGCT 659
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 AGCTTCTATCAATATTGAAAGGAGGATGCTTTTACGTGCACTAGGAGCAGAGATTGTGCT 681
Query 660 AACGAATCCAGAGAAGGGTCTCAGAGGAGCAGTGGATAAAGCCAAAGAGATTGTTCTCAA 719
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 682 AACGAATCCAGAGAAGGGTCTCAAAGGAGCAGTGGATAAAGCCAAAGAGATTGTTCTCAA 741
Query 720 GACAAAGAACGCATATATGTTTCAGCAATTCGACAATACGGCAAATACAAAGATCCACTT 779
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 742 GACAAAGAACGCATATATGTTTCAGCAATTCGACAATACAGCAAATACAAAGATCCACTT 801
Query 780 TGAAACTACAGGACCAGAAATCTGGGAAGATACAATGGGTAATGTCGATATATTCGTTGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 TGAAACTACAGGACCAGAAATCTGGGAAGATACAATGGGTAATGTCGATATATTCGTTGC 861
Query 840 CGGAATTGGAACTGGTGGTACTGTAACTGGTACTGGAGGTTTCTTAAAAATGATGAACAA 899
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 862 CGGAATAGGAACTGGTGGTACTGTAACTGGTACTGGAGGTTTCTTGAAAATGATGAACAA 921
Query 900 GAATATTAAGGTAGTCGGCGTTGAACCATCAGAAAGAAGCGTGATTTCTGGAGACAATCC 959
| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 922 GGATATTAAGGTAGTTGGCGTTGAACCATCAGAAAGAAGTGTGATTTCTGGAGACAA-CC 980
Query 960 C-GGTTACTTACCGGGAATCTTGGATGTTAAATTACTTGATGAAGTGTTTAAGGTTAGCA 1018
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CTGGTTACTTACCGGGAATCTTGGATGTTAAATTACTTGATGAAGTGTTTAAGGTTAGCA 1040
Query 1019 ACGGGGAAGCGATTGAGATGGCGAGGAGATTAGCTTTAGAGGAAGGATTGCTGGTTGGGA 1078
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1041 ACGGGGAAGCGATTGAGATGGCGAGGAGACTAGCTTTAGAGGAAGGATTGCTGGTTGGGA 1100
Query 1079 TTTCATCTGGAGCCGCTGCAGTAGCAGCAATTAGCTTGGCTAAAAGAGCAGAGAATGCCG 1138
||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1101 TTTCATCTGGAGCTGCTGCAGTAGCAGCAGTCAGCTTGGCTAAAAGAGCAGAGAATGCCG 1160
Query 1139 GAAAACTTATCACGGTTCTGTTTCCGAGCCATGGCGAGCGGTATATCACAACGGCTTTGT 1198
| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1161 GTAAACTAATCACGGTTCTGTTTCCAAGCCATGGCGAGCGGTATATCACAACGGCTCTGT 1220
Query 1199 TTAGTTCCATCCACAAAGAGGTCCAAGAGATGAGATATTAGTAGCAGCCATTAGAAAA 1256
||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TTAGTTCCATCAACAGAGAAGTCCAAGAGATGAGATATTAGTAGCAGCCATTAGAAAA 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5