BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927897
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03700.1 | Symbols: | Plasma-membrane choline transporter f... 2230 0.0
AT3G04440.1 | Symbols: | Plasma-membrane choline transporter f... 2193 0.0
AT3G03702.1 | Symbols: | other RNA | chr3:916356-918834 REVERS... 676 0.0
> AT3G03700.1 | Symbols: | Plasma-membrane choline transporter
family protein | chr3:916435-918490 FORWARD LENGTH=1680
Length=1680
Score = 2230 bits (1207), Expect = 0.0
Identities = 1392/1483 (94%), Gaps = 6/1483 (0%)
Strand=Plus/Plus
Query 1 TGGCAAAATACAACGCATCTATGCCTATACCAACAAGCAACGGCCATGCCTCTCGCGTGC 60
|||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 50 TGGC-AAATACAACGCATCTATGCCTACACCAACAAGCAACGGTCATGCCTCTCGCGTGC 108
Query 61 AGATTCAAGAATCGAGAACAATGTCTCCTCTTCCTCCTTCTTCTTCTCCAATCGCCTTCA 120
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 109 AGATTCAAGAACCAAGAATAATGTCTCCTCTTCCTCCTTCTTCTTCTCCAATCGCCTTCA 168
Query 121 AGGAACAACAGGGAAGACCACCTCCCACAACACAACAAA-CATTAGCCGGAAAATTCTTT 179
|||||||||| || ||||||||||| ||||||||||||| || |||| |||||| |||||
Sbjct 169 AGGAACAACAAGGTAGACCACCTCCAACAACACAACAAACCA-TAGCAGGAAAACTCTTT 227
Query 180 AGAAATCTCTTCAAGGGTCTTCTCTTCTCACAATTAACCTTAATCTCGCTTTTGGTGATC 239
|||| ||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 228 AGAACTCTTTTCAAGGGTCTTCTCTTCTCACAACTAACCTTAATCTCACTTTTGGTGATC 287
Query 240 GTTCTCACCATTCGCGGTCTCATCTCAGCAAGTACACACCATTTCCACCCCAAGAAATGG 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 288 GTTCTCACCATTCGCGGTCTCATCTCAGCAAGTACACACCATTTCCACCTCAAGAAATGG 347
Query 300 TACCCTCCTTTACTAGCATCTGTTGCTGTCTCAGGAGTTGCATCTTTAGCCTGGCAATGC 359
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 348 TACCCTCCTTTACTAGCATCTGTTGCTGTCTCAGGAATTGCATCTTTAGCATGGCAATGC 407
Query 360 ATCTTTATATACAATCCATCTAGAGCAGTCAAAGCAACTTTCTGGCTTAGCCCAATACTC 419
|||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 408 ATCTTTATCTACAATCCATCAAGAGCAGTCAAAGCAACGTTCTGGCTTAGTCCAATACTC 467
Query 420 ACTTGCTCAGTAGGGATCTTGCTTGTTTTGATTGGCTCAGCGGTAGATGCAGGGATTGGT 479
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 468 ACCTGCTCGGTAGGAATCTTGCTTGTTTTGATTGGCTCAGCGGTAGATGCAGGTATAGGT 527
Query 480 GCAGTATTTGTGCTTTTCGCCATTACTCAGTCTCTGTATGGTTGCTGGATCACTCCGAGG 539
||||| ||||| |||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 528 GCAGTGTTTGTCCTTTTCGCCATTACTCAGTCCCTCTATGGTTGCTGGATTACTCCGAGG 587
Query 540 TTTGAATACACCGATAAGTTACTATCCCTTGCTACAGCATTTCCACCTGCAAGAACCAGA 599
|||| ||||||||||| || |||| ||||| |||||||||||||||||||||||||||
Sbjct 588 CTTGAGTACACCGATAAAATATTATCACTTGCCACAGCATTTCCACCTGCAAGAACCAGA 647
Query 600 GAAGTAGTCTGTTTATCAATCATAGTTAGCGTCGTTTACTCTGGTTTCTTGGTGACTGGA 659
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 648 GAAGTAGTCTGCTTATCAATCATAGTCAGTGTCGTTTACTCTGGTTTCTTGGTGACTGGA 707
Query 660 ATTGGAGGAGCAACTTCCACTAGAACAAATCTAGATCTCTTGTTCATATCCGTAATCATG 719
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 708 ATTGGAGGAGCAACTTCCACTAGAACAAATCTTGATATCTTGTTCATATCCGTAATCATA 767
Query 720 ATAAGCTTAGCATGGACAATGCAAGTTCTCAAGAATGTACAACAAGTTGCGATTTCACGG 779
||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 768 ATAAGCTTAGCATGGACGATGCAAGTTATCAAGAATGTTCAACAAGTTGCGATTTCACGG 827
Query 780 GCGAGATATGTAAACTTTGCACATGGAGAAGATATGGACGCTTGGAATGCTTTTCGCATC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 828 GCGAGATATGTAAACTTTGCACATGGAGAAGATATGGACGCTTGGAATGCTTTCCGCATC 887
Query 840 ACTTTGAAACACCTGACTGGGAGCATCTGCATTGGCTCGACGCTTGTTCCAATCATCGTG 899
||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 888 ACTATGAAACACTTGACTGGGAGCATCTGCGTTGGCTCGACGCTTGTTCCAATCATCGTA 947
Query 900 TTCATCAGAGGATCGATAAGAAGCGTTAATCTAATGTCAGGGAGCAGTGATGAGGTCATG 959
||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 948 TTCATAAGAGGATCAATAAGAAGTGTTAATCTAATGTCAGGGAGCAGCGATGAGGTCATG 1007
Query 960 TATACCGGTGCTGATTGCTTCTCTACCATTGCTAACAAACTCATTACACTTGGAAACAGA 1019
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TATTCAGGTGCTGATTGCTTCTCTACCATTGCTAACAAACTCATTACACTTGGAAACAGA 1067
Query 1020 TGGGGCTTTGTACATGTTGGAACCTATGATAAAGGCTTTGTGGAGGCTTCGAGTGATACT 1079
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1068 TGGGGCTTTGTACATGTTGGAACCTATGATAAAGGATTCATGGAGGCTTCGAGTGATACC 1127
Query 1080 TGGAAGAAGTTCAGAAGTACAACTGGATTAGAGAAACTGATTGACTCGGATCTCACTAGC 1139
||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||
Sbjct 1128 TGGAAGAAGTTCAGAAGCACAACAGGGTTGGAGAAACTGATTGACTCGGATCTCACTAGC 1187
Query 1140 TCCTTCTGCTTCCTCAGTGCGGTTTCTGTTGGAGCGGTCTCTTCATTAACTGCTGGAATA 1199
|||||||| || |||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 1188 TCCTTCTGTTTTCTCAGTGCTGTTTCTGTTGGAGCTGTCTCTTCATTAACTGCTGGGATA 1247
Query 1200 TGGATGTTGTTAATACACAAGGACTATGCCCTGGAAGTGTCTCTCTATGCTTTCATAATT 1259
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1248 TGGATGTTGTTAATACACAAGGACTATGCCCTGGAAGTGACTCTCTATGCTTTCATAATT 1307
Query 1260 GGATATTTCGTGGGAAGGGTAGGTTTGGCGTGGCTACAGGCATGTGTCTTGGCTTACTAT 1319
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1308 GGATATTTTGTGGGAAGGGTAGGTTTGGCGTGGCTACAGGCATGTGTATTGGCTTACTAT 1367
Query 1320 GTAGCTTATTCTGAAGATCCTCAAAGCATGAGGTTTGACGGTACAATTCCA-AATCGTAT 1378
||||||||||||||||||||||| |||||||| ||||| || ||||||||| || |||||
Sbjct 1368 GTAGCTTATTCTGAAGATCCTCAGAGCATGAGATTTGATGGAACAATTCCACAA-CGTAT 1426
Query 1379 TCAACGTCTTCAAATGTTAAGTGCTCACAGAGATAACAGGGAGCTTGAGGTGGGTagaga 1438
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1427 TCAGCGTCTTCAAATGTTAAGTGCTCACCGAGATAACAGGGAGCTTGAGGTGGGTAGAGA 1486
Query 1439 gagagaagaagaTAGTTATAATAATTGTTAAGCCTTGA-GGAG 1480
|||||||||||||||||||| ||||||| || | ||| ||||
Sbjct 1487 CAGAGAAGAAGATAGTTATAACAATTGTTGAGTCATGAAGGAG 1529
> AT3G04440.1 | Symbols: | Plasma-membrane choline transporter
family protein | chr3:1178718-1180700 FORWARD LENGTH=1612
Length=1612
Score = 2193 bits (1187), Expect = 0.0
Identities = 1372/1463 (94%), Gaps = 5/1463 (0%)
Strand=Plus/Plus
Query 21 ATGCCTATACCAACAAGCAACGGCCATGCCTCTCGCGTGCAGATTCAAGAATCGAGAACA 80
||||||| ||||||||||||||| |||||||||||| |||||||||||||| | |||| |
Sbjct 1 ATGCCTACACCAACAAGCAACGGTCATGCCTCTCGCATGCAGATTCAAGAACCAAGAATA 60
Query 81 ATGTCTCCTCTTCCTCCTTCTTCTTCTCCAATCGCCTTCAAGGAACAACAGGGAAGACCA 140
|||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 61 ATGTCTCCTCTTCCTCCTTCTTCTTCTCCATTCGCCTTCAAGGAACAACAAGGTAGACCA 120
Query 141 CCTCCCACAACACAACAAA-CATTAGCCGGAAAATTCTTTAGAAATCTCTTCAAGGGTCT 199
||||| ||||||||||||| || |||| |||||| ||||||||| ||| |||||||||||
Sbjct 121 CCTCCAACAACACAACAAACCA-TAGCAGGAAAACTCTTTAGAACTCTTTTCAAGGGTCT 179
Query 200 TCTCTTCTCACAATTAACCTTAATCTCGCTTTTGGTGATCGTTCTCACCATTCGCGGTCT 259
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 TCTCTTCTCACAACTAACCTTAATCTCACTTTTGGTGATCGTTCTCACCATTCGCGGTCT 239
Query 260 CATCTCAGCAAGTACACACCATTTCCACCCCAAGAAATGGTACCCTCCTTTACTAGCATC 319
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 CATCTCAGCAAGTACACACCATTTCCACCTCAAGAAATGGTACCCTCCTTTACTAGCATC 299
Query 320 TGTTGCTGTCTCAGGAGTTGCATCTTTAGCCTGGCAATGCATCTTTATATACAATCCATC 379
|||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 300 TGTTGCTGTCTCAGGAATTGCATCTTTAGCATGGCAATGCATCTTTATCTACAATCCATC 359
Query 380 TAGAGCAGTCAAAGCAACTTTCTGGCTTAGCCCAATACTCACTTGCTCAGTAGGGATCTT 439
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 360 AAGAGCAGTCAAAGCAACGTTCTGGCTTAGCCCAATACTCACCTGCTCGGTAGGAATCTT 419
Query 440 GCTTGTTTTGATTGGCTCAGCGGTAGATGCAGGGATTGGTGCAGTATTTGTGCTTTTCGC 499
||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||
Sbjct 420 GCTTGTTTTGATTGGCTCAGCGGTAGATGCAGGTATAGGTGCAGTGTTTGTCCTTTTCGC 479
Query 500 CATTACTCAGTCTCTGTATGGTTGCTGGATCACTCCGAGGTTTGAATACACCGATAAGTT 559
|||||||||||| || |||||||||||||| ||||||||| |||| ||||||||||| |
Sbjct 480 CATTACTCAGTCCCTCTATGGTTGCTGGATTACTCCGAGGCTTGAGTACACCGATAAAAT 539
Query 560 ACTATCCCTTGCTACAGCATTTCCACCTGCAAGAACCAGAGAAGTAGTCTGTTTATCAAT 619
| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 ATTATCACTTGCCACAGCATTTCCACCTGCAAGAACCAGAGAAGTAGTCTGCTTATCAAT 599
Query 620 CATAGTTAGCGTCGTTTACTCTGGTTTCTTGGTGACTGGAATTGGAGGAGCAACTTCCAC 679
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CATAGTCAGTGTCGTTTACTCTGGTTTCTTGGTGACTGGAATTGGAGGAGCAACTTCCAC 659
Query 680 TAGAACAAATCTAGATCTCTTGTTCATATCCGTAATCATGATAAGCTTAGCATGGACAAT 739
|||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 660 TAGAACAAATCTTGATATCTTGTTCATATCCGTAATCATAATAAGCTTAGCATGGACGAT 719
Query 740 GCAAGTTCTCAAGAATGTACAACAAGTTGCGATTTCACGGGCGAGATATGTAAACTTTGC 799
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCAAGTTATCAAGAATGTTCAACAAGTTGCGATTTCACGGGCGAGATATGTAAACTTTGC 779
Query 800 ACATGGAGAAGATATGGACGCTTGGAATGCTTTTCGCATCACTTTGAAACACCTGACTGG 859
||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||
Sbjct 780 ACATGGAGAAGATATGGACGCTTGGAATGCTTTCCGCATCACTATGAAACACTTGACTGG 839
Query 860 GAGCATCTGCATTGGCTCGACGCTTGTTCCAATCATCGTGTTCATCAGAGGATCGATAAG 919
|||||||||| |||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 840 GAGCATCTGCGTTGGCTCGACGCTTGTTCCAATCATCGTATTCATAAGAGGATCAATAAG 899
Query 920 AAGCGTTAATCTAATGTCAGGGAGCAGTGATGAGGTCATGTATACCGGTGCTGATTGCTT 979
||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 900 AAGTGTTAATCTAATGTCAGGGAGCAGCGATGAGGTCATGTATTCAGGTGCTGATTGCTT 959
Query 980 CTCTACCATTGCTAACAAACTCATTACACTTGGAAACAGATGGGGCTTTGTACATGTTGG 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTCTACCATTGCTAACAAACTCATTACACTTGGAAACAGATGGGGCTTTGTACATGTTGG 1019
Query 1040 AACCTATGATAAAGGCTTTGTGGAGGCTTCGAGTGATACTTGGAAGAAGTTCAGAAGTAC 1099
||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1020 AACCTATGATAAAGGATTCATGGAGGCTTCGAGTGATACCTGGAAGAAGTTCAGAAGCAC 1079
Query 1100 AACTGGATTAGAGAAACTGATTGACTCGGATCTCACTAGCTCCTTCTGCTTCCTCAGTGC 1159
||| || || |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1080 AACAGGGTTGGAGAAACTGATTGACTCGGATCTCACTAGCTCCTTCTGTTTTCTCAGTGC 1139
Query 1160 GGTTTCTGTTGGAGCGGTCTCTTCATTAACTGCTGGAATATGGATGTTGTTAATACACAA 1219
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1140 TGTTTCTGTTGGAGCTGTCTCTTCATTAACTGCTGGGATATGGATGTTGTTAATACACAA 1199
Query 1220 GGACTATGCCCTGGAAGTGTCTCTCTATGCTTTCATAATTGGATATTTCGTGGGAAGGGT 1279
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 GGACTATGCCCTGGAAGTGACTCTCTATGCTTTCATAATTGGATATTTTGTGGGAAGGGT 1259
Query 1280 AGGTTTGGCGTGGCTACAGGCATGTGTCTTGGCTTACTATGTAGCTTATTCTGAAGATCC 1339
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1260 AGGTTTGGCGTGGCTACAGGCATGTGTATTGGCTTACTATGTAGCTTATTCTGAAGATCC 1319
Query 1340 TCAAAGCATGAGGTTTGACGGTACAATTCCA-AATCGTATTCAACGTCTTCAAATGTTAA 1398
||| |||||||| ||||| || ||||||||| || |||||||| ||||||||||||||||
Sbjct 1320 TCAGAGCATGAGATTTGATGGAACAATTCCACAA-CGTATTCAGCGTCTTCAAATGTTAA 1378
Query 1399 GTGCTCACAGAGATAACAGGGAGCTTGAGGTGGGTagagagagagaagaagaTAGTTATA 1458
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1379 GTGCTCACCGAGATAACAGGGAGCTTGAGGTGGGTAGAGACAGAGAAGAAGATAGTTATA 1438
Query 1459 ATAATTGTTAAGCCTTGA-GGAG 1480
| ||||||| || | ||| ||||
Sbjct 1439 ACAATTGTTGAGTCATGAAGGAG 1461
> AT3G03702.1 | Symbols: | other RNA | chr3:916356-918834 REVERSE
LENGTH=1451
Length=1451
Score = 676 bits (366), Expect = 0.0
Identities = 439/475 (92%), Gaps = 2/475 (0%)
Strand=Plus/Minus
Query 121 AGGAACAACAGGGAAGACCACCTCCCACAACACAACAAA-CATTAGCCGGAAAATTCTTT 179
|||||||||| || ||||||||||| ||||||||||||| || |||| |||||| |||||
Sbjct 913 AGGAACAACAAGGTAGACCACCTCCAACAACACAACAAACCA-TAGCAGGAAAACTCTTT 855
Query 180 AGAAATCTCTTCAAGGGTCTTCTCTTCTCACAATTAACCTTAATCTCGCTTTTGGTGATC 239
|||| ||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 854 AGAACTCTTTTCAAGGGTCTTCTCTTCTCACAACTAACCTTAATCTCACTTTTGGTGATC 795
Query 240 GTTCTCACCATTCGCGGTCTCATCTCAGCAAGTACACACCATTTCCACCCCAAGAAATGG 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 794 GTTCTCACCATTCGCGGTCTCATCTCAGCAAGTACACACCATTTCCACCTCAAGAAATGG 735
Query 300 TACCCTCCTTTACTAGCATCTGTTGCTGTCTCAGGAGTTGCATCTTTAGCCTGGCAATGC 359
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 734 TACCCTCCTTTACTAGCATCTGTTGCTGTCTCAGGAATTGCATCTTTAGCATGGCAATGC 675
Query 360 ATCTTTATATACAATCCATCTAGAGCAGTCAAAGCAACTTTCTGGCTTAGCCCAATACTC 419
|||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 674 ATCTTTATCTACAATCCATCAAGAGCAGTCAAAGCAACGTTCTGGCTTAGTCCAATACTC 615
Query 420 ACTTGCTCAGTAGGGATCTTGCTTGTTTTGATTGGCTCAGCGGTAGATGCAGGGATTGGT 479
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 614 ACCTGCTCGGTAGGAATCTTGCTTGTTTTGATTGGCTCAGCGGTAGATGCAGGTATAGGT 555
Query 480 GCAGTATTTGTGCTTTTCGCCATTACTCAGTCTCTGTATGGTTGCTGGATCACTCCGAGG 539
||||| ||||| |||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 554 GCAGTGTTTGTCCTTTTCGCCATTACTCAGTCCCTCTATGGTTGCTGGATTACTCCGAGG 495
Query 540 TTTGAATACACCGATAAGTTACTATCCCTTGCTACAGCATTTCCACCTGCAAGAA 594
|||| ||||||||||| || |||| ||||| |||||||||||||||| |||||
Sbjct 494 CTTGAGTACACCGATAAAATATTATCACTTGCCACAGCATTTCCACCTGGAAGAA 440
Score = 305 bits (165), Expect = 6e-82
Identities = 197/212 (93%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 1271 GGGAAGGGTAGGTTTGGCGTGGCTACAGGCATGTGTCTTGGCTTACTATGTAGCTTATTC 1330
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 319 GGGAAGGGTAGGTTTGGCGTGGCTACAGGCATGTGTATTGGCTTACTATGTAGCTTATTC 260
Query 1331 TGAAGATCCTCAAAGCATGAGGTTTGACGGTACAATTCCA-AATCGTATTCAACGTCTTC 1389
|||||||||||| |||||||| ||||| || ||||||||| || |||||||| |||||||
Sbjct 259 TGAAGATCCTCAGAGCATGAGATTTGATGGAACAATTCCACAA-CGTATTCAGCGTCTTC 201
Query 1390 AAATGTTAAGTGCTCACAGAGATAACAGGGAGCTTGAGGTGGGTagagagagagaagaag 1449
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 200 AAATGTTAAGTGCTCACCGAGATAACAGGGAGCTTGAGGTGGGTAGAGACAGAGAAGAAG 141
Query 1450 aTAGTTATAATAATTGTTAAGCCTTGA-GGAG 1480
|||||||||| ||||||| || | ||| ||||
Sbjct 140 ATAGTTATAACAATTGTTGAGTCATGAAGGAG 109
Score = 193 bits (104), Expect = 5e-48
Identities = 117/123 (95%), Gaps = 1/123 (1%)
Strand=Plus/Minus
Query 1 TGGCAAAATACAACGCATCTATGCCTATACCAACAAGCAACGGCCATGCCTCTCGCGTGC 60
|||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1323 TGGC-AAATACAACGCATCTATGCCTACACCAACAAGCAACGGTCATGCCTCTCGCGTGC 1265
Query 61 AGATTCAAGAATCGAGAACAATGTCTCCTCTTCCTCCTTCTTCTTCTCCAATCGCCTTCA 120
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AGATTCAAGAACCAAGAATAATGTCTCCTCTTCCTCCTTCTTCTTCTCCAATCGCCTTCA 1205
Query 121 AGG 123
|||
Sbjct 1204 AGG 1202
Score = 163 bits (88), Expect = 4e-39
Identities = 104/112 (93%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 1080 TGGAAGAAGTTCAGAAGTACAACTGGATTAGAGAAACTGATTGACTCGGATCTCACTAGC 1139
||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||
Sbjct 447 TGGAAGAAGTTCAGAAGCACAACAGGGTTGGAGAAACTGATTGACTCGGATCTCACTAGC 388
Query 1140 TCCTTCTGCTTCCTCAGTGCGGTTTCTGTTGGAGCGGTCTCTTCATTAACTG 1191
|||||||| || |||||||| |||||||||||||| ||||||||||||||||
Sbjct 387 TCCTTCTGTTTTCTCAGTGCTGTTTCTGTTGGAGCTGTCTCTTCATTAACTG 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73443397335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5