BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927898
Length=2809
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03710.1 | Symbols: RIF10, PNP | polyribonucleotide nucleoti... 4680 0.0
AT2G47220.1 | Symbols: DUF5, ATDUF5 | DOMAIN OF UNKNOWN FUNCTIO... 850 0.0
AT3G04445.1 | Symbols: | pseudogene, putative polyribonucleoti... 603 4e-171
> AT3G03710.1 | Symbols: RIF10, PNP | polyribonucleotide nucleotidyltransferase,
putative | chr3:919542-925338 FORWARD LENGTH=3103
Length=3103
Score = 4680 bits (2534), Expect = 0.0
Identities = 2706/2791 (97%), Gaps = 3/2791 (0%)
Strand=Plus/Plus
Query 21 ATGCTGACGAGTCCCAGTAACGCACTTCACAGTAGTACTCCACACTTCTGGCCAGTTCGC 80
||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1 ATGTTGACGAGTCCCAGTAACGCACTTCACAGTAGTACTCCACAATTCTGGCCACTTCGC 60
Query 81 CGGAGCAGGCTTTGCCGTTCCCGGAATTTCCCTCGTTTTCACTCCGGCGAACGCAGCAGC 140
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGGAGCAAGCTTTGCCGTTCCCGGAATTTCCCTCGTTTTCACTCCGGCGAACGCAGCAGC 120
Query 141 GGCGGAGGAGGAAAATTGTGCTCGCTCTCTCTTCTCTCCGCAAGTGGCGCCAGTAAATTC 200
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 121 GGCGGAGGAGGAAAATTGTGCTCGCTCTCTCTTCTCTCCGGAAGTGGCGCCGGTAAATTC 180
Query 201 AGTGTCAGAGCTCTAGTTAGACCAGATGTTACCGAAGACGCTGACTCTGTCGGCGATGGG 260
|||||||||||||||||||| || |||| |||||| ||||||||||| ||||||||||||
Sbjct 181 AGTGTCAGAGCTCTAGTTAGGCCTGATGATACCGACGACGCTGACTCCGTCGGCGATGGG 240
Query 261 TCTCTGGCTTTTCCTAACCACGTTTCTGTCAAAATTCCTTTCGGAAATAGAGAGATTTTA 320
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TCTCTGGCTTTTCCTAACCACGTTTCTGTCAAAATTCCATTCGGAAATAGAGAGATTTTA 300
Query 321 GTAGAGACTGGTCTTATGGGGAGACAAGCAAGCTCTGCTGTAACAGTGACAGATGGAGAA 380
|| ||||||||||| ||||||||||||||||| ||||| || || || ||||||||||||
Sbjct 301 GTTGAGACTGGTCTCATGGGGAGACAAGCAAGTTCTGCAGTCACGGTCACAGATGGAGAA 360
Query 381 ACTATTGTCTACACATCTGTTTGTCTAGCTGATGTTCCGAGTGAGCCATCAGATTTTCTT 440
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACTATTGTCTACACATCCGTTTGTCTAGCTGATGTTCCGAGTGAGCCATCAGATTTTCTT 420
Query 441 CCCCTTTATGTTCACTATCAGGAGCGATTCTCAGCTGTTGGTCGAACTAGTGGTGGATTT 500
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 CCCCTTTATGTTCACTATCAGGAGCGATTCTCAGCTGTAGGTCGAACTAGTGGTGGATTT 480
Query 501 TTTAAGCGAGAAGGAAGAACAAAAGATCACGAGGTTCTGATTTGTAGGTTGATCGATAGA 560
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTAAGCGAGAAGGGAGAACCAAAGATCACGAGGTTCTGATTTGTAGGTTGATCGATAGA 540
Query 561 CCTCTACGCCCCACTATGCCCAAAGGTTTCTACAATGAAACTCAGATATTATCCTGGGTT 620
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 CCTCTACGCCCCACTATGCCCAAAGGTTTCTACAATGAAACTCAGATTTTATCCTGGGTT 600
Query 621 TTGAGCTATGATGGATTACACGCACCTGATGCTTTAGCTGTTACATCTGCTGGAATTGCT 680
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGAGCTACGATGGATTACACGCACCTGATGCTTTAGCTGTTACATCTGCTGGAATTGCT 660
Query 681 GTAGCTCTTTCAGAAGTACCAAATGCGAAAGCGATTGCAGGAGTTCGGGTTGGTCTAATT 740
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 GTAGCTCTTTCAGAAGTACCAAATGCGAAAGCGATTGCAGGAGTTCGGGTTGGTCTTATT 720
Query 741 GGGGGCGAATTCATCGTCAATCCAACCGTGAAGGAGATGGAAGAGTCACAGCTAGATTTG 800
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 GGGGGTGAATTCATTGTCAATCCAACCGTGAAGGAGATGGAAGAATCACAGCTAGATTTG 780
Query 801 TTTCTAGCTGGAACAGATACAGCCATAT-TAACGATAGAGGGATACAGTAATTTTCTTCC 859
|||||||||||||||||||| || || | |||||||||||||||||||||||||||||||
Sbjct 781 TTTCTAGCTGGAACAGATACTGCAAT-TCTAACGATAGAGGGATACAGTAATTTTCTTCC 839
Query 860 TGAGGAAATGCTGCTCCAAGCTGTTAAAGTTGGACAGGATGCTGTACAGGCTACATGCAT 919
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGAGGAAATGCTTCTCCAAGCTGTTAAAGTTGGACAGGATGCTGTACAGGCTACATGCAT 899
Query 920 CGCTATTGAAGTTTTAGCAAAGAAATATGGAAAGCCCAAAATGCTTGACGCTATCAGATT 979
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 TGCTATTGAAGTTTTAGCAAAGAAATATGGAAAGCCTAAAATGCTTGACGCTATCAGATT 959
Query 980 ACCACCTCCAGAGCTATACAAGCATGTGAAAGAACTTGCTGGTGAGGAATTGACCAAAGC 1039
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 ACCACCTCCAGAGCTATACAAGCATGTGAAAGAACTTGCTGGTGAGGAATTGACAAAAGC 1019
Query 1040 GCTACAAATTAAGAGCAAAATATCGAGAAGGAAAGCCATATCGTCCCTGGAAGAAAAGGT 1099
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTTACAAATTAAGAGTAAAATATCGAGAAGGAAAGCCATATCGTCCCTGGAAGAAAAGGT 1079
Query 1100 CTTGACAATACTGACAGAGAAGGGGTATGTTATTGATGAGGTTGCATTTGGAACCATAGA 1159
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 1080 CTTGACAATACTGACAGAGAAGGGATATGTTATTGATGAGGTAGCTTTTGGAACCATAGA 1139
Query 1160 AGCACAACCTGATCTGTTGGAGGATGAAGACGAGGATGAGGAAGTTGTTCCTGAAGGGGA 1219
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 AGCACAACCGGATCTGTTGGAGGATGAAGACGAGGATGAGGAAGTTGTTCCTGAAGGTGA 1199
Query 1220 GGTGGACCAAGGCGATGTACACATTAGGCCCATCCCTCGGAAACCTATTCCTTTACTATT 1279
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1200 GGTGGACCAAGGCGATGTTCACATTAGACCCATCCCTCGGAAACCTATTCCTTTACTATT 1259
Query 1280 TTCTGAAGTAGATGTCAAGCTGGTCTTCAAAGAAGTATCGTCAAAGCTCCTACGGAGGCG 1339
||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||
Sbjct 1260 TTCTGAAGTAGATGTCAAGCTAGTCTTCAAAGAAGTATCGTCGAAGCTTCTACGTAGGCG 1319
Query 1340 AATTGTTGAGGGAGGTAAAAGAAGTGATGGTCGGACTCTGGATGAGATTCGTCCAATTAA 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AATTGTTGAGGGAGGTAAAAGAAGTGATGGTCGGACTCTGGATGAGATTCGTCCAATTAA 1379
Query 1400 TTCAAGATGTGGACTGCTTCCAAGGGCACATGGAAGTACTCTGTTCACACGTGGTGAAAC 1459
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1380 TTCAAGATGTGGACTGCTTCCCAGGGCACATGGAAGTACTCTGTTCACACGTGGGGAAAC 1439
Query 1460 ACAGGCACTGGCAGTTGTTACGCTTGGTGATAAACAAATGGCACAGAGAATTGACAACCT 1519
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1440 ACAGGCACTGGCAGTTGTTACGCTTGGTGATAAACAAATGGCGCAGAGAATTGACAACCT 1499
Query 1520 TGAGGGTTCTGATGAATACAAGAGGTTCTATCTTCAGTACACTTTTCCTCCATCGTCTGT 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TGAGGGTTCTGATGAATACAAGAGGTTCTATCTTCAGTACACTTTTCCTCCATCGTCTGT 1559
Query 1580 TGGTGAAGTTGGACGAATTGGTGCACCCAGTAGAAGAGAAATAGGTCATGGGACACTAGC 1639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TGGTGAAGTTGGACGAATTGGTGCACCCAGTAGAAGAGAAATAGGTCATGGGACACTAGC 1619
Query 1640 AGAGCGAGCATTGGAGACCATTCTACCTAGTGATGATGACTTTCCTTACACAATACGTGT 1699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AGAGCGAGCATTGGAGACCATTCTACCTAGTGATGATGACTTTCCTTACACAATACGTGT 1679
Query 1700 TGAAAGTACAGTAATTGAAAGCAATGGTTCTTCAAGCATGGCATCTGTTTGCGGCGGTTG 1759
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1680 TGAAAGTACAGTAATTGAAAGCAATGGTTCTTCAAGTATGGCATCTGTTTGTGGCGGTTG 1739
Query 1760 CTTGGCTTTGCAAGATGCCGGAGTTCCAGTCAAGTGTTCTGTTGCTGGCATAGCAATGGG 1819
|||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 1740 CTTGGCTTTGCAAGATGCTGGAGTTCCAGTCAAATGTTCTGTTGCTGGGATAGCAATGGG 1799
Query 1820 AATGGTTTGGGATACTGAAGAATTTGGCGGTGATGGATCTCCCCTTATCCTTTCTGACAT 1879
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1800 AATGGTTTGGGATACTGAAGAATTTGGAGGTGATGGATCTCCCCTTATCCTTTCTGACAT 1859
Query 1880 CACTGGAGCTGAAGATGCATCTGGTGATATGGACTTTAAGGTTGCTGGGAATGAAGATGG 1939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 CACTGGAGCTGAAGATGCATCTGGTGATATGGACTTTAAGGTTGCTGGGAATGAAGATGG 1919
Query 1940 TGTTACCGCCTTTCAGATGGACATTAAGGTAGGAGGAATCACTTTAGAGATAATGGAAAA 1999
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1920 CGTTACCGCCTTTCAGATGGACATCAAGGTAGGAGGAATTACTTTAGAGATAATGGAAAA 1979
Query 2000 GGCTCTGATACAGGCGAAAGCTGGGCGTCGCCATATTCTTGCTGAAATGGCAAAGTGCTC 2059
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 GGCTCTAATACAGGCAAAAGCTGGGCGTCGCCATATTCTTGCTGAAATGGCAAAGTGCTC 2039
Query 2060 ACCGCCTCCTACATTAAGCCTCTCAAAATACGCTCCATTGATACATATTATGAAGGTTCA 2119
||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2040 ACCGCCTCCCACGCTAAGCCTCTCAAAATATGCTCCATTGATACTTATTATGAAGGTTCA 2099
Query 2120 TCCAAGCAAAGTGTACTCTCTTATTGGTTCTGGTGGTAAGAAAGTAAAGAGCATCATTGA 2179
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2100 TCCAAGCAAAGTATACTCTCTTATTGGTTCTGGAGGTAAGAAAGTAAAGAGCATCATTGA 2159
Query 2180 AGAATCTGGAGTTGAGGCCATTGATATGCAAGATGATGGAACTGTCAAAATTATGGCAAT 2239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2160 AGAATCTGGAGTTGAGGCCATTGACATGCAAGATGATGGAACTGTCAAAATTATGGCAAT 2219
Query 2240 CGATGTAGCGAGTCTGGAAAGGGCGAAAGCGATTATTAGTGGATTGACAATGGTTCCCGC 2299
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2220 TGATGTAGCGAGTCTAGAAAGGGCGAAAGCGATTATTAGTGGATTGACAATGGTTCCCTC 2279
Query 2300 TGTTGGTGATATCTACAGGAATTGTGAAATCAAGTCAATGGCTCCATATGGTGCCTTTGT 2359
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2280 TGTTGGTGATATCTACAGGAATTGTGAAATCAAGTCAATGGCTCCTTATGGTGCATTTGT 2339
Query 2360 AGAGATTGCGCCTGGGCGTGAAGGTCTTTGCCATATCAGTGAGCTGAGTGCTGAATGGCT 2419
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2340 AGAGATAGCGCCTGGGCGGGAAGGTCTTTGCCATATCAGTGAGCTGAGTGCTGAATGGCT 2399
Query 2420 TGCAAAACCAGAGGATGCCTATAAAGTAGGAGACCGCATTGACGTCAAACTAATAGAGGT 2479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2400 TGCAAAACCAGAGGATGCCTATAAAGTAGGAGACCGCATTGACGTCAAATTAATAGAGGT 2459
Query 2480 GAATGAAAAGGGTCAGCTTCGACTTAGTGTACGGGCTTTACTTCCCGAATCAGAGACAGA 2539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2460 AAATGAAAAGGGTCAGCTTCGACTTAGTGTACGGGCTTTACTTCCCGAATCAGAGACAGA 2519
Query 2540 CAAAGACAGTCAGAAACAACAGCCGGCAGGTGATTCTACCAAAGACAAGGGTTCGCAAAG 2599
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2520 CAAAGACAGTCAGAAACAACAGCCGGCAGGTGATTCTACCAAAGACAAGAGTTCGCAAAG 2579
Query 2600 GAAATATGTAAATACTTCGTCAAAGGACCGTGCAGCAGCAGGAGCATCAAAGGTTTCATC 2659
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2580 GAAATATGTAAATACTTCGTCAAAGGACCGTGCAGCTGCAGGAGCATCAAAGGTTTCATC 2639
Query 2660 TGGGGATGAACTTGTCCTGAAGAAGAAAGATGTAAGGAGAGCAACTGGTGGTAGTAGTGA 2719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2640 TGGGGATGAACTTGTCCTGAAGAAGAAAGATGTAAGGAGAGCAACTGGTGGTAGTAGTGA 2699
Query 2720 CAAGACAATGAAAAGCAATAGCAGTACCAACGAAGAAAGTTTAGTCAACGGTGAAGCTAC 2779
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2700 CAAGACAATGAATAGCAATAGCAGTACCAACGAAGAAAGTTTAGTCAACGGTGAAGCTAC 2759
Query 2780 AATCAGCTAGTG-AATGCAAACAAGATCACT 2809
|||||||||||| ||||||||||||||||||
Sbjct 2760 AATCAGCTAGTGGAATGCAAACAAGATCACT 2790
> AT2G47220.1 | Symbols: DUF5, ATDUF5 | DOMAIN OF UNKNOWN FUNCTION
724 5 | chr2:19383743-19386954 FORWARD LENGTH=2062
Length=2062
Score = 850 bits (460), Expect = 0.0
Identities = 505/527 (96%), Gaps = 1/527 (0%)
Strand=Plus/Plus
Query 11 GAAGAAGAAGATGCTGACGAGTCCCAGTAACGCACTTCACAGTAGTACTCCACACTTCTG 70
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 102 GAAGAAGAAGATGCTGACGAGTCCCAGTAACGCACTTCACAGTAGTACTCCACAGTTCTG 161
Query 71 GCCAGTTCGCCGGAGCAGGCTTTGCCGTTCCCGGAATTTCCCTCGTTTTCACTCCGGCGA 130
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 162 GCCAGTTCGCCGGAGCAGACTTTGCCGTTCCCGGAATTTCCCTCGTTTTCACTCCGGCGA 221
Query 131 ACGCAGCAGCGGCGGAGGAGGAAAATTGTGCTCGCTCTCTCTTCTCTCCGCAAGTGGCGC 190
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 222 ACGCAGCAGCGGCGGAGGAGGAAAATTGTGCTCGCTCTCTCTTCTCTCCGGAAGTGGCGC 281
Query 191 CAGTAAATTCAGTGTCAGAGCTCTAGTTAGACCAGATGTTACCGAAGACGCTGACTCTGT 250
|||||||||||||||||||||||||||||| || |||| |||||| ||||||||||| ||
Sbjct 282 CAGTAAATTCAGTGTCAGAGCTCTAGTTAGGCCTGATGATACCGATGACGCTGACTCCGT 341
Query 251 CGGCGATGGGTCTCTGGCTT-TTCCTAACCACGTTTCTGTCAAAATTCCTTTCGGAAATA 309
|||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct 342 CGGCGATGGGTCTCTGGCTTGTTCCTAACCACGTATCTGTCAAAATTCCATTCGGAAATA 401
Query 310 GAGAGATTTTAGTAGAGACTGGTCTTATGGGGAGACAAGCAAGCTCTGCTGTAACAGTGA 369
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || || ||||
Sbjct 402 GAGAGATTTTAGTTGAGACTGGTCTCATGGGGAGACAAGCAAGTTCTGCAGTCACGGTGA 461
Query 370 CAGATGGAGAAACTATTGTCTACACATCTGTTTGTCTAGCTGATGTTCCGAGTGAGCCAT 429
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 462 CAGATGGAGAAACTATTGTCTTCACATCCGTTTGTCTAGCTGATGTTCCGAGTGAGCCAT 521
Query 430 CAGATTTTCTTCCCCTTTATGTTCACTATCAGGAGCGATTCTCAGCTGTTGGTCGAACTA 489
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 522 CAGATTTTCTTCCCCTTTATGTTCACTATCAGGAGCGATTCTCAGCTGTAGGTCGAACTA 581
Query 490 GTGGTGGATTTTTTAAGCGAGAAGGAAGAACAAAAGATCACGAGGTT 536
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 582 GTGGTGGATTTTTTAAGCGAGAAGGGAGAACCAAAGATCACGAGGTT 628
> AT3G04445.1 | Symbols: | pseudogene, putative polyribonucleotide
phophorylase, similar to polyribonucleotide phophorylase
GB:AAC49669 from (Spinacia oleracea); blastp match of 58%
identity and 7.3e-14 P-value to PIR|S64680|S64680 exoribonuclease
100 RNP - spinach | chr3:1181706-1183041 FORWARD LENGTH=883
Length=883
Score = 603 bits (326), Expect = 4e-171
Identities = 427/471 (91%), Gaps = 26/471 (6%)
Strand=Plus/Plus
Query 9 AAGAAGAAGAAGATGCTGACGAGTCCCAGTAACGCACTTCACAGTAGTACTCCACACTTC 68
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 54 AAGAAGAAGAAGATGCTGACGAGTCCCAGTAACGCACTTCATAGTAGTACTCCACACTTC 113
Query 69 TGGCCAGTTCGCCGGAGCAGGCTTTGCCGTTCCCGGAATTTCCCTCGTTTTCACTCCGGC 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 TGGCCAGTTCGCCGGAGCAGGCTTTGCCGTTCCCGGAATTTCCCTCGTTTTCACTCCGGC 173
Query 129 GAACGCAGCAGCGGCGGAGGAGGAAAATTGTGCTCGCTCTCTCTTCTCTCCGCAAGTGGC 188
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 174 GAACGCAGCAGCGGCGGAGGAGGAAAATTGTGCTCGCTCTCTCTTCTCTCCGGAAGTGGC 233
Query 189 GCCAGTAAATTCAGTGTCAGAGCTCTAGTTAGACCAGATGTTACCGAA-GACGCTGACTC 247
||| |||||||||||||||||||||||||||| || |||| |||| || |||||||||||
Sbjct 234 GCCGGTAAATTCAGTGTCAGAGCTCTAGTTAGGCCTGATGATACC-AACGACGCTGACTC 292
Query 248 TGTCGGCGATGGGTCTCTGGCTTTTCCTAACCACGTTTCTGTCAAAATTCCTTTCGGAAA 307
||||||||||||| |||| | | || | || | || | | ||||||
Sbjct 293 CGTCGGCGATGGGTTTCTG--T---CA-AA--A--TT-C---CA-----C-T--CGGAAA 330
Query 308 TAGAGAGATTTTAGTAGAGACTGGTCTTATGGGGAGACAAGCAAGCTCTGCTGTAACAGT 367
||||||||||||||| ||||||| ||| ||||||||||||||||| ||||| || || ||
Sbjct 331 TAGAGAGATTTTAGTTGAGACTGATCTCATGGGGAGACAAGCAAGTTCTGCAGTCACGGT 390
Query 368 GACAGATGGAGAAACTATTGTCTACACATC--TGTTTGTCTAGCTGATGTTCCGAGTGAG 425
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||
Sbjct 391 GACAGATGGAGAAACTATTGTCTACACATCCGTGTTTGTCTAGCTGATGTTCCAAGTTAG 450
Query 426 CCATCAGATTTTCTTCCCCTTTATGTTCACTATCAGGAGCGATTCTCAGCT 476
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 CCATCAGATTTTCTTCCCCTTTATGTTCACTATCAGGAGCGATTCTCAGCT 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139564435426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5