BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927901
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03730.1 | Symbols: | F-box family protein with a domain of... 1868 0.0
AT4G12810.1 | Symbols: | F-box family protein | chr4:7522831-7... 412 3e-114
AT1G67160.1 | Symbols: | F-box family protein with a domain of... 316 2e-85
AT3G03726.1 | Symbols: | Protein of unknown function (DUF295) ... 191 2e-47
> AT3G03730.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr3:935139-936320 REVERSE LENGTH=1182
Length=1182
Score = 1868 bits (1011), Expect = 0.0
Identities = 1128/1185 (95%), Gaps = 6/1185 (1%)
Strand=Plus/Plus
Query 21 ATGAGCGATTCCAACGaaaaaaaGACATGCAACGATTCAAAGCAGCCGATACTTGTCCCG 80
||||||||||||||| |||||||||||||||||| | |||||||| |||||||||| |
Sbjct 1 ATGAGCGATTCCAAC---AAAAAGACATGCAACGATGCGAAGCAGCCAATACTTGTCCTG 57
Query 81 GACTTGGTTAGATTGGTCTTGGAACGCTTGAGCTTTGTTGATTTTCATCGAGCTAGATGT 140
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 58 GACTTGGTTAGATTGGTCTTGGAACGCTTGAGCTTTGTAGATTTTCATCGAGCTAGATGT 117
Query 141 GTTTCTTCAGGATGGTATTCCGCTTCGAAATCATGCATTGGAGGAACAAATCCGACAGCT 200
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 118 GTTTCTTCAGTATGGTATTCCGCTTCGAAATCATGCATTGGAGGAACAAATCCAACAGCT 177
Query 201 CCATGGATTATCCTCTTTCCAAACGAACATGTGAAAACCAACAACGATTCGTGTAAGTTG 260
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CCATGGATCATCCTCTTTCCAAACGAACATGTGAAAACCAACAACGATTCGTGTAAGTCA 237
Query 261 TTTGATCCTCGTGACCATAGTTCATACACAATAAGAGATCTCGGGTTTGATATGGTTAGG 320
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ATTGATCCTCGTGATCATAGTTCATACACAATAAGAGATCTCGGGTTTGATATGGTTAGG 297
Query 321 AGTCGTTGTTTGGCAAGTTCCGGTAGCTGGTTCCTTATGTTAGACCATAAAACTGATTTT 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGTCGTTGTTTGGCAAGTTCCGGTAGCTGGTTCCTTATGTTAGACCATAAAACTGATTTT 357
Query 381 CATCTCTTGAATCTATTTACTCGAGAGAGAATTCCTCTTCCGTCTCTGGAATCAATTGAT 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CATCTCTTGAATCTATTTACTCGAGAGAGAATTCCTCTTCCGTCTCTGGAATCAATTGAT 417
Query 441 GGATGGCAGATGAAGTTTGTGAGAACCGGTGACTCTGATTTCGAGATGTCTATGTATTAC 500
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 418 GGATTGCAGATGAAGTTTGTGAGAACCGGTGACTGTGGTTTCGAGATGTCTATGTATTAC 477
Query 501 AAAGCACATGGACTTGTTTCTTATGGTAAAAACAGCGATCTTAGAATAAGGGGTGCGGTT 560
||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||||
Sbjct 478 AAAGCTCATGGACTTATTTCTTATGGTAAAAACAGCGATCTTAGAATAAGCGATGCGGTT 537
Query 561 TTGTGGGTAGATGAAAAAACCAGAGATTACTTTGTTGTTTGGTTTCATCATAGCACTTTT 620
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTGTGGGTAGATGAAAAAAACGGAGATTACTTTGTTGTTTGGTTTCATCATAGCACTTTT 597
Query 621 GCATATCACAAGAAAGGAGGTGACAATAATAGCTGGAAAGTGTTTCAACCTTCAAAGCAT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GCATATCACAAGAAAGGAGGTGACAATAATAGCTGGAAAGTGTTTCAACCTTCAAAGCAT 657
Query 681 CAAGGATGCCGCCATATGGTGTATAAAGAAAGCAAACTTTACGTGCTTAGTCCAGCTCGA 740
||||||||| | | ||||||| ||||||| |||||||||||||||||| ||||||||||
Sbjct 658 CAAGGATGCATCAACATGGTGTTTAAAGAAGGCAAACTTTACGTGCTTAATCCAGCTCGA 717
Query 741 AATATTTCTGTGTTTGATTTCTCCGGTGGTCATTCTCCAGTGGAGTATGCAACTCTCCCA 800
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 718 AATATTTCTGTGTTTGATTTCTCCGGTGGTCATTCTCCAGTGGAATATGCAACTCCCCCA 777
Query 801 TCTCCGAA--A-GATTGTTATGTCAGGAATCTTGCTGTGACATTGTCTGGAGAAGTTTTG 857
|||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCTCCGAATGATGATTACTATGTCAGGAATCTTGCTGTGACATTGTCTGGAGAAGTTTTG 837
Query 858 ATCATTTCAAGCAATCCAAAGAAATGCTTCTTCACCCTCTACAAGATAGATCCTAAATCA 917
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 838 ATCATTTCAAGCAATCCAAAGAAATGCTTCGTCAAACTCTACAAGATAGATCCTAAATCA 897
Query 918 TCAAAATGGAGATTAATCAAGTCTATAGGGGACGAAGCATTGATTTTGGACCTAGGAATA 977
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 898 TCAGAATGGAGATTAATCAAGTCTATAGGAGACGAAGCATTGATTTTGGACCTAGGAATC 957
Query 978 ACGGTTGCAGCCAAAGATGGAGTTATGAGAAATTGCATATATTTTAGTCATGATGATTTA 1037
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 958 ACGGTTGCAGCCAAAGATGGAGTTATGAGAAATTGCATATATTTTAGTCATCATGAGTTA 1017
Query 1038 CATAGATATAAAGGGGTTAGTCTATGCAATGATGATAAGTACGGTATTTGCGTCCACCCT 1097
| |||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |
Sbjct 1018 CTTAGATATAAAGGGGTTAGTCTATGCAATGATGATAAGTACGGGATTTGCATCTACCAT 1077
Query 1098 ATTAAAACCAAGAAAAAGGTCCAAGTGTTTGAACATCTTACTACTTCATCGCCAATACCA 1157
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1078 ATTAAAACCAAGAAGAAGGTCCAAGAGTTTGAACATCTTACTACTTCATCGCCAATACTA 1137
Query 1158 TTCAAGGATGCTCGTTGGTTTTTCCCCACTTTTGGTGGAAAGTAG 1202
|| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1138 TTTAAGGATGCTCGTTGGTTTTTTCCCACTTTTGGTGGAAACTAG 1182
> AT4G12810.1 | Symbols: | F-box family protein | chr4:7522831-7523979
REVERSE LENGTH=1149
Length=1149
Score = 412 bits (223), Expect = 3e-114
Identities = 370/440 (84%), Gaps = 14/440 (3%)
Strand=Plus/Plus
Query 3 AAGAAACAGAAGAAGGAGATGAGCGATTCCAACGaaaaaaaGACATGC-A--ACGATTC- 58
||||| |||||||||||||||||||||| | ||| |||||||||| | | | |||||
Sbjct 10 AAGAAGCAGAAGAAGGAGATGAGCGATT-C--CGAGAAAAAGACATTCAATGAAGATTCG 66
Query 59 AAAGCAGCCGATACTTGTCC-CGGACTTGGTTAGATTGGTCTTGGAACGCTTGAGCTTTG 117
||| || ||||||||| || |||| |||| |||||| |||||||||||||||||||||
Sbjct 67 AAA-CATTCGATACTTG-CCGTGGACCTGGTAAGATTGATCTTGGAACGCTTGAGCTTTG 124
Query 118 TTGATTTTCATCGAGCTAGATGTGTTTCTTCAGGATGGTAT-TCCGCTTCGAAATCA-TG 175
|||||||||||||||| ||||| ||||||||| ||||||| | ||||| ||| || |
Sbjct 125 TTGATTTTCATCGAGCGAGATGCGTTTCTTCAATATGGTATATT-GCTTCCAAAACAGT- 182
Query 176 CATTGGAGGAACAAATCCGACAGCTCCATGGATTATCCTCTTTCCAAACGAACATGTGAA 235
|||||||| ||||||||| ||| |||||||| | ||||| |||||||| | | ||||| |
Sbjct 183 CATTGGAGTAACAAATCCAACAACTCCATGGCTCATCCTATTTCCAAAAGGAGATGTGGA 242
Query 236 AACCAACAACGATTCGTGTAAGTTGTTTGATCCTCGTGACCATAGTTCATACACAATAAG 295
|| || || ||||| |||||||||| ||||||| ||| | | | |||| | ||||
Sbjct 243 AATAAAAAAAGATTCATGTAAGTTGTACGATCCTCATGAAAACAAAACCTACATAGTAAG 302
Query 296 AGATCTCGGGTTTGATATGGTTAGGAGTCGTTGTTTGGCAAGTTCCGGTAGCTGGTTCCT 355
||| |||||||||||| | |||| ||||||||||||||| ||||||||||||||||||||
Sbjct 303 AGACCTCGGGTTTGATTTAGTTACGAGTCGTTGTTTGGCTAGTTCCGGTAGCTGGTTCCT 362
Query 356 TATGTTAGACCATAAAACTGATTTTCATCTCTTGAATCTATTTACTCGAGAGAGAATTCC 415
|||||||||||||| |||||| |||||||| |||||||| |||||||||| ||| |||||
Sbjct 363 TATGTTAGACCATAGAACTGAATTTCATCTTTTGAATCTGTTTACTCGAGTGAGGATTCC 422
Query 416 TCTTCCGTCTCTGGAATCAA 435
|||||||||||| |||||||
Sbjct 423 TCTTCCGTCTCTAGAATCAA 442
> AT1G67160.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr1:25124819-25127098 REVERSE
LENGTH=1353
Length=1353
Score = 316 bits (171), Expect = 2e-85
Identities = 550/721 (76%), Gaps = 74/721 (10%)
Strand=Plus/Plus
Query 555 GCGGTTTTGTGGGTAGATGAAAAAACCAGAGATTACTTTGTTGTTTGGT-TTC-ATCATA 612
|||||| ||||||||||||| |||| |||||||||||||| ||||| || || || ||
Sbjct 475 GCGGTTCTGTGGGTAGATGACAAAAGCAGAGATTACTTTG-TGTTTTGTAATCTTTC-TA 532
Query 613 G-CACTTTTGC--AT-ATCACAAGAAAGGAGGTGACAATAATAGCTGGAAAGTGT-TTCA 667
| | | | || || ||||||||| ||||| |||||| |||||||||||||| | ||||
Sbjct 533 GTTA-TGTAGCATATCATCACAAGAGAGGAGATGACAACAATAGCTGGAAAGT-TCTTCA 590
Query 668 ACC-TTCAAAGCATCAAGGATGCCG-CCATATGGTGTATAAAGAAAGCAAACTTTACGTG 725
||| | |||||||||||| || | ||||||||| |||||||||||| |||||| ||
Sbjct 591 ACCAAT-AAAGCATCAAGGCTG-TGTTGATATGGTGTTTAAAGAAAGCAAGCTTTACATG 648
Query 726 CTTAGTCCAGC-TCGAAATAT-T-TCTGTGTTTGATTTCTCCGGTGGTCATTCTCC---A 779
||||| || | || ||| | | |||| |||||||||||||||||| |||||| |
Sbjct 649 ATTAGTGCA-CATC--AATGTCTCACTGTTTTTGATTTCTCCGGTGGTGTTTCTCCAGTA 705
Query 780 G---TGGAGTATGCAACTCTCCCATC-TC------CG--AA-AG-----AT-TG--TTAT 818
| |||| | ||||| | || ||| || | || || || || |||
Sbjct 706 GAAATGGAATGTGCAAGTTTCGGATCGTCTGTGTGTGTAAATAGATTTCATATGAAGTAT 765
Query 819 GTCAGGAATCTTGCTGTGACATTGTCTGGAGAAGTTTTGATCA---T---T--T-CAA-G 868
|||| |||||||||||||| |||||||||||||||||||||| | | | || |
Sbjct 766 TTCAGCAATCTTGCTGTGACTTTGTCTGGAGAAGTTTTGATCATTGTAGGTGGTAAAATG 825
Query 869 CA-A----TCCA-AAG--AAATGCTTCTTCACCCTCTACAAGATAGATCCTAAATCATCA 920
| | |||| | | |||||| ||||||| || | ||||| ||||| |||||||||
Sbjct 826 GATAGTTCTCCAGAGGCTAAATGCGTCTTCACTGTCAATAAGATGGATCCAAAATCATCA 885
Query 921 -AA-ATGGAG-ATTAATCAAGTCTATAGGGGACGAAGCATTGATTTTGGACCTAGGAATA 977
|| | || | |||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct 886 GAATTTACAGTACTAATCAAGTCTATAGGGGACGAGGCATTGCTTTTGGATTTAGGAATT 945
Query 978 ACGGTTGCAGCCAAAGATGGAGTTATGAGAAATTGCATATATTTTAGTCATGATGATTTA 1037
|||||| | ||||||||||||||||||||| ||||||||||||||||| ||||| | ||
Sbjct 946 ACGGTTCCGGCCAAAGATGGAGTTATGAGAGATTGCATATATTTTAGTAATGATCA-GTA 1004
Query 1038 -CATAGATATAAAGGGGTTAGTCTATGCAATGATGATAA-G-T-ACGGTATTTGCGTCCA 1093
||||||| | ||| |||||||| || ||| | |||| | | || |||||||||| |
Sbjct 1005 TCATAGATGTTGTGGGATTAGTCTACGCGATGGTTATAACGCTGACCGTATTTGCGTTTA 1064
Query 1094 CCCTATTAAAACCAAGAAAAAGGTCCAAGTGTTTGAACATCTTACTACTTCATCGCCAAT 1153
|| || || | | | |||||||| |||||||||||| |||||||| ||| |||
Sbjct 1065 CCAAATCGGAAGCGATTATGTGGTCCAAGAGTTTGAACATCTAACTACTTCCTCGACAAA 1124
Query 1154 ACCATTCAAGGATGCTCGTTGGTTTTTCCCCACTTTTGGTGG-AAA-GTAGTTTGC-TCT 1210
|| ||||||||||||||||||||||||||||||||||||| ||| || |||| | |||
Sbjct 1125 ACTTTTCAAGGATGCTCGTTGGTTTTTCCCCACTTTTGGTGATAAATGTTGTTTCCATCT 1184
Query 1211 A 1211
|
Sbjct 1185 A 1185
> AT3G03726.1 | Symbols: | Protein of unknown function (DUF295)
| chr3:933341-934464 REVERSE LENGTH=870
Length=870
Score = 191 bits (103), Expect = 2e-47
Identities = 151/173 (87%), Gaps = 7/173 (4%)
Strand=Plus/Plus
Query 895 TCTACAAGATAGATCCTAAATCATCAAAATGGAG-ATTAATCAAGTCTATAGGGGACGAA 953
|||||||| | |||||||| |||||||||||||| | ||||||| |||||||||||||||
Sbjct 644 TCTACAAGTTGGATCCTAAGTCATCAAAATGGAGCA-TAATCAAATCTATAGGGGACGAA 702
Query 954 GCATTGATTTTGGACCTAGGAATAACGGTTGCAGCCAAAGATGGAGTTATGAGAAATTGC 1013
|||||||||||||| || ||||||| |||||||| |||||||||||||||| |||||||
Sbjct 703 GCATTGATTTTGGATCTTGGAATAATTGTTGCAGCAAAAGATGGAGTTATGAAAAATTGC 762
Query 1014 ATATATTTTAGTCATGATGATTTACATAGATATAAAG-GGG-TTAGTCTATGC 1064
|||||||| ||| ||||| |||| |||| | || || ||| |||||||||||
Sbjct 763 ATATATTT-AGTAATGATCATTTTCATA-AG-TACAGTGGGATTAGTCTATGC 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5