BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927902
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03740.1 | Symbols: ATBPM4, BPM4 | BTB-POZ and MATH domain 4... 2207 0.0
AT3G43700.1 | Symbols: ATBPM6, BPM6 | BTB-POZ and MATH domain 6... 315 1e-84
> AT3G03740.1 | Symbols: ATBPM4, BPM4 | BTB-POZ and MATH domain
4 | chr3:936878-939808 REVERSE LENGTH=1627
Length=1627
Score = 2207 bits (1195), Expect = 0.0
Identities = 1308/1360 (96%), Gaps = 18/1360 (1%)
Strand=Plus/Plus
Query 2 CAACGACGAAATTTTCGAAATGCCATCGCCACCGACGACGACTTCTCTCTCCGTCACACA 61
||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 71 CAACGACGAAA-TTTCGAAATGCCATCGCCACCGACGACGACTTCTCTCTCGGTGACACA 129
Query 62 AACCATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCCAAAGGAATCGG 121
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 130 GACCATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCTAAAGGAATCGG 189
Query 122 GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAGGCTATCAATGGGCAATCTA 181
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 190 GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGGGGTTATCAATGGGCTATCTA 249
Query 182 TTTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TTTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGC 309
Query 242 TCTT-GCTAGCGATGGTACCGATGTTAGGGCTCTCTTTGAGCTTTCTTTGCTTGATCAGA 300
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 310 T-TTAGCTAGCGATGGTACCGATGTTAGGGCTCTTTTTGAGCTTTCTTTGCTTGATCAGA 368
Query 301 GTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTT 428
Query 361 ATACACTCAAGTATCGTGGCAGCATGTGGGGCTACAAGCGCTTTTTTAGAAGACTTATGC 420
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 429 ATACTCTCAAGTATCGTGGCAGCATGTGGGGCTACAAGCGCTTTTTTCGAAGACTTATGC 488
Query 421 TGGAAACATCTGATTTTCTGAAGGATGATTGTTTGAAAATTAATTGTACTGTGGGAGTTG 480
|||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct 489 TGGAAACATCTGATTTTCTGAAGGATGATTGTCTGAAAATTAATTGCACCGTGGGAGTTG 548
Query 481 TGGTCTCAGAAATAGATTGCCCACGGTTACATTCTATTCATGTCCCTGCATCTGATATTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 TGGTCTCAGAAATAGATTGCCCACGGTTACATTCTATTCATGTCCCTGCATCTGATATTG 608
Query 541 GATCTCATTTCGGGATGCTTCTGGAGAATGAGGACGGTTCAGATATAACTTTTAATGTCT 600
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 609 GATCTCATTTCGGGATGCTTCTAGAGAACGAGGACGGTTCAGATATAACTTTTAACGTCT 668
Query 601 CTGGTGAAAAGTTCCGTGCTCACAGGTTAGTATTGGCTGCTCGATCTCCTGTCTTTGAAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CTGGTGAAAAGTTCCGTGCTCACAGGTTAGTATTGGCTGCTCGATCTCCTGTCTTTGAAA 728
Query 661 GCGAGTTCCTCGATGATACTGGAGAAGAAGATCGTGATATTGAAGTTACTGACATGGAGC 720
||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 729 GCGAGTTCCTCGATGTTACGGGAGAAGAAGATCGTGATATCGAAGTTACTGACATGGAGC 788
Query 721 CTAAGGTTTTCAAGGCTTTGCTCCACTACATATACAAGGATGCTCTCATTGAAGATGCAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 CTAAGGTTTTCAAGGCTTTGCTCCACTACATATACAAGGATGCTCTCATTGAAGATGCAG 848
Query 781 AGTCATCATCATCTTCCGGTTCATCTGTTGGTCCATCTGCATCAGACACATTAGCTGCAA 840
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 849 AGTCATCATCATCTTCCGGTTCATCTGTTGGTCCATCTGCCTCAGACACATTAGCTGCAA 908
Query 841 AGCTACTAGGAGCCGCTGATAAATACAAGTTGCCTAGACTAAGTCTAATGTGCGAGTCAG 900
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 909 AGCTACTAGGAGCCGCTGATAAATACAAGTTGCCTAGATTAAGTCTAATGTGCGAGTCAG 968
Query 901 TGCTCTGCAAGGATATATCAGTAGATTCCGTTGCAAATATTTTGGCGCTTGCTGACCGCT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 969 TGCTCTGCAAGGATATATCAGTAGATTCCGTTGCAAATATTTTGGCGCTTGCTGACCGTT 1028
Query 961 ACAATGCTTCCGCCTTGAAATCTGTTTGTCTGAAATTCGCAGCAGAAAATCTCATCGCTG 1020
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1029 ACAATGCTTCCGCCTTGAAATCCGTTTGTCTGAAATTCGCAGCAGAAAATCTCATCGCTG 1088
Query 1021 TTATGAGGTCAGATGGGTTTGATTATCTAAGGGAACACTGCCCATCACTTCAGTCTGAAC 1080
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1089 TTATGAGGTCAGATGGGTTTGATTATCTAAGGGAACACTGCCCGTCACTTCAGTCTGAGC 1148
Query 1081 TTCTGAAAACAGTTGCGGGATGCGAAGAGGAGTTAAGCGGAGGAGGAGGGAAGACGAGAA 1140
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 TTCTGAAAACAGTTGCGGGTTGCGAAGAGGAGTTAAGCGGAGGAGGAGGGAAGACGAGAA 1208
Query 1141 GCGTATGGGGCCAATTCTCAGACGGTGGAGCTGAGACAAATGAGAGAAACGGAAGACAAC 1200
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1209 GCGTATGGGGCCAATTCTCAGACGGTGGAGCTGAGACAAA---------CGGAAGACAAG 1259
Query 1201 CACAGACTTGGGGAGATATCAATGGAGCAGCAGAGAGAAGCCAGAGTGTTTGGCTTGAAG 1260
||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||
Sbjct 1260 CACAGACTTGGGGAGATATCAATGGAGGAGCAGAGAGAAGCCAGAGTGTTTGGGTCGAAG 1319
Query 1261 TTGTTAACGCTAATGCAAGTAGTAGAAACAATAATGACAACAATAACAGTGATGACCCAA 1320
|||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTGTGAACGCTAATGGAAGCGGTAGAAACAATAATGACAACAATAACAGTGATGACCCAA 1379
Query 1321 TGGCAGAA---GA---TTGAGCAAATAAAAGGTAATAAAA 1354
|||||||| || ||||||||||||||||||||||||
Sbjct 1380 TGGCAGAACTAGAAGATTGAGCAAATAAAAGGTAATAAAA 1419
> AT3G43700.1 | Symbols: ATBPM6, BPM6 | BTB-POZ and MATH domain
6 | chr3:15601868-15603888 FORWARD LENGTH=1713
Length=1713
Score = 315 bits (170), Expect = 1e-84
Identities = 436/561 (78%), Gaps = 32/561 (6%)
Strand=Plus/Plus
Query 104 TTTGGCCAAAGGAATCGG-GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAG 162
||| || |||||||| || | | || |||||||| || || |||| |||| |||| ||||
Sbjct 214 TTTAGCTAAAGGAATTGGTG-TAGGGAAACACATAGCAAGTGATAATTTCTCCGTAGGAG 272
Query 163 GCTATCAATGGGCAATCTAT-TTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCT 221
| ||||||||| | |||| | |||| ||||| || || ||||| |||||||| || ||
Sbjct 273 GTTATCAATGGACTATCT-TCGTCTACCCTGACGGTAAAAATCCAGAGGATAACTCTTCT 331
Query 222 TATGTCTCCGTTTTCATTGCTCTT-GCTAGCG-ATGGTACCGATGTTAGGGCTCTCTTTG 279
|| ||||| || ||||| | | || ||||| | || |||| || ||||| || || ||||
Sbjct 332 TACGTCTCTGTGTTCATCG-TTTTGGCTAGTGAAT-GTACTGAAGTTAGAGCGCTTTTTG 389
Query 280 AGCTTTCT-TTGCTTGATCAGAGTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGAT 338
|||||||| ||| ||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 390 AGCTTTCTCTTG-TTGATCAAAGTGGTAAAGGGAAGCATAAGGTTCATAGCCATTTTAAT 448
Query 339 CGTGCTCTTGA-GAGCGGTCCTTATACACTCAAGTATC-GTGGCAGCATGTGGGGCTACA 396
||| | ||||| | | ||||||||||| || ||||| | | || || |||||||| ||||
Sbjct 449 CGTTCACTTGATG-GTGGTCCTTATACGCTTAAGTA-CAGAGGAAGTATGTGGGGATACA 506
Query 397 AGCGCTTTTTT-AGAAGA-CTTATGCTGGAAACATCTGATTTTCTGAAGGATGATTGTTT 454
|||| ||| || ||| | | | |||| || |||||||| | ||| || || ||||| ||
Sbjct 507 AGCG-TTTCTTCAGACGGTCCT-TGCTTGAGACATCTGACTATCTTAAAGACGATTGCTT 564
Query 455 GAAAATTAATTGTACTGTGGGAGTTGTGGTCTCAGAAATAG-ATTGCCCACGGTTACAT- 512
||||||||||||||| || |||||||| || |||||||| | ||||||||||||||| |
Sbjct 565 GAAAATTAATTGTACAGTTGGAGTTGTCGTTTCAGAAAT-GCATTGCCCACGGTTAC-TC 622
Query 513 TCTATTCATGTCCCTG-CATCTGATA-TTGGATCTCATTTCGGGATGCTT-CTGGAGAAT 569
|| ||||||||||| | | || || | ||||||| ||||| || | | || ||||| | |
Sbjct 623 TCGATTCATGTCCCAGAC-TCAGA-ACTTGGATCACATTTTGGAAAG-TTGCTGGATACT 679
Query 570 G-AGGACGGTTCAGATATAACTTTTAATGTCT-CTGGTGAAAAGTTCCGTGCTCACAGGT 627
| | || || ||| | || ||| | || | | ||||| ||||| | ||||| | |
Sbjct 680 TTACAA-GGCTCGGATGTCACATTTGACGT-TGCCGGTGAGAAGTTTCAAGCTCATAAAT 737
Query 628 TAGTATTGGCTGCTCGATCTC 648
| || |||||||| |||||||
Sbjct 738 TGGTTTTGGCTGCACGATCTC 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66666323760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5