BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg927902 Length=1354 Score E Sequences producing significant alignments: (Bits) Value AT3G03740.1 | Symbols: ATBPM4, BPM4 | BTB-POZ and MATH domain 4... 2207 0.0 AT3G43700.1 | Symbols: ATBPM6, BPM6 | BTB-POZ and MATH domain 6... 315 1e-84 > AT3G03740.1 | Symbols: ATBPM4, BPM4 | BTB-POZ and MATH domain 4 | chr3:936878-939808 REVERSE LENGTH=1627 Length=1627 Score = 2207 bits (1195), Expect = 0.0 Identities = 1308/1360 (96%), Gaps = 18/1360 (1%) Strand=Plus/Plus Query 2 CAACGACGAAATTTTCGAAATGCCATCGCCACCGACGACGACTTCTCTCTCCGTCACACA 61 ||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 71 CAACGACGAAA-TTTCGAAATGCCATCGCCACCGACGACGACTTCTCTCTCGGTGACACA 129 Query 62 AACCATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCCAAAGGAATCGG 121 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 130 GACCATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCTAAAGGAATCGG 189 Query 122 GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAGGCTATCAATGGGCAATCTA 181 ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| Sbjct 190 GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGGGGTTATCAATGGGCTATCTA 249 Query 182 TTTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGC 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 250 TTTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGC 309 Query 242 TCTT-GCTAGCGATGGTACCGATGTTAGGGCTCTCTTTGAGCTTTCTTTGCTTGATCAGA 300 | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 310 T-TTAGCTAGCGATGGTACCGATGTTAGGGCTCTTTTTGAGCTTTCTTTGCTTGATCAGA 368 Query 301 GTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 369 GTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTT 428 Query 361 ATACACTCAAGTATCGTGGCAGCATGTGGGGCTACAAGCGCTTTTTTAGAAGACTTATGC 420 |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 429 ATACTCTCAAGTATCGTGGCAGCATGTGGGGCTACAAGCGCTTTTTTCGAAGACTTATGC 488 Query 421 TGGAAACATCTGATTTTCTGAAGGATGATTGTTTGAAAATTAATTGTACTGTGGGAGTTG 480 |||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| Sbjct 489 TGGAAACATCTGATTTTCTGAAGGATGATTGTCTGAAAATTAATTGCACCGTGGGAGTTG 548 Query 481 TGGTCTCAGAAATAGATTGCCCACGGTTACATTCTATTCATGTCCCTGCATCTGATATTG 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 549 TGGTCTCAGAAATAGATTGCCCACGGTTACATTCTATTCATGTCCCTGCATCTGATATTG 608 Query 541 GATCTCATTTCGGGATGCTTCTGGAGAATGAGGACGGTTCAGATATAACTTTTAATGTCT 600 |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 609 GATCTCATTTCGGGATGCTTCTAGAGAACGAGGACGGTTCAGATATAACTTTTAACGTCT 668 Query 601 CTGGTGAAAAGTTCCGTGCTCACAGGTTAGTATTGGCTGCTCGATCTCCTGTCTTTGAAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 CTGGTGAAAAGTTCCGTGCTCACAGGTTAGTATTGGCTGCTCGATCTCCTGTCTTTGAAA 728 Query 661 GCGAGTTCCTCGATGATACTGGAGAAGAAGATCGTGATATTGAAGTTACTGACATGGAGC 720 ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 729 GCGAGTTCCTCGATGTTACGGGAGAAGAAGATCGTGATATCGAAGTTACTGACATGGAGC 788 Query 721 CTAAGGTTTTCAAGGCTTTGCTCCACTACATATACAAGGATGCTCTCATTGAAGATGCAG 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 789 CTAAGGTTTTCAAGGCTTTGCTCCACTACATATACAAGGATGCTCTCATTGAAGATGCAG 848 Query 781 AGTCATCATCATCTTCCGGTTCATCTGTTGGTCCATCTGCATCAGACACATTAGCTGCAA 840 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 849 AGTCATCATCATCTTCCGGTTCATCTGTTGGTCCATCTGCCTCAGACACATTAGCTGCAA 908 Query 841 AGCTACTAGGAGCCGCTGATAAATACAAGTTGCCTAGACTAAGTCTAATGTGCGAGTCAG 900 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 909 AGCTACTAGGAGCCGCTGATAAATACAAGTTGCCTAGATTAAGTCTAATGTGCGAGTCAG 968 Query 901 TGCTCTGCAAGGATATATCAGTAGATTCCGTTGCAAATATTTTGGCGCTTGCTGACCGCT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 969 TGCTCTGCAAGGATATATCAGTAGATTCCGTTGCAAATATTTTGGCGCTTGCTGACCGTT 1028 Query 961 ACAATGCTTCCGCCTTGAAATCTGTTTGTCTGAAATTCGCAGCAGAAAATCTCATCGCTG 1020 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1029 ACAATGCTTCCGCCTTGAAATCCGTTTGTCTGAAATTCGCAGCAGAAAATCTCATCGCTG 1088 Query 1021 TTATGAGGTCAGATGGGTTTGATTATCTAAGGGAACACTGCCCATCACTTCAGTCTGAAC 1080 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1089 TTATGAGGTCAGATGGGTTTGATTATCTAAGGGAACACTGCCCGTCACTTCAGTCTGAGC 1148 Query 1081 TTCTGAAAACAGTTGCGGGATGCGAAGAGGAGTTAAGCGGAGGAGGAGGGAAGACGAGAA 1140 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1149 TTCTGAAAACAGTTGCGGGTTGCGAAGAGGAGTTAAGCGGAGGAGGAGGGAAGACGAGAA 1208 Query 1141 GCGTATGGGGCCAATTCTCAGACGGTGGAGCTGAGACAAATGAGAGAAACGGAAGACAAC 1200 |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1209 GCGTATGGGGCCAATTCTCAGACGGTGGAGCTGAGACAAA---------CGGAAGACAAG 1259 Query 1201 CACAGACTTGGGGAGATATCAATGGAGCAGCAGAGAGAAGCCAGAGTGTTTGGCTTGAAG 1260 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||| Sbjct 1260 CACAGACTTGGGGAGATATCAATGGAGGAGCAGAGAGAAGCCAGAGTGTTTGGGTCGAAG 1319 Query 1261 TTGTTAACGCTAATGCAAGTAGTAGAAACAATAATGACAACAATAACAGTGATGACCCAA 1320 |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1320 TTGTGAACGCTAATGGAAGCGGTAGAAACAATAATGACAACAATAACAGTGATGACCCAA 1379 Query 1321 TGGCAGAA---GA---TTGAGCAAATAAAAGGTAATAAAA 1354 |||||||| || |||||||||||||||||||||||| Sbjct 1380 TGGCAGAACTAGAAGATTGAGCAAATAAAAGGTAATAAAA 1419 > AT3G43700.1 | Symbols: ATBPM6, BPM6 | BTB-POZ and MATH domain 6 | chr3:15601868-15603888 FORWARD LENGTH=1713 Length=1713 Score = 315 bits (170), Expect = 1e-84 Identities = 436/561 (78%), Gaps = 32/561 (6%) Strand=Plus/Plus Query 104 TTTGGCCAAAGGAATCGG-GATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGAG 162 ||| || |||||||| || | | || |||||||| || || |||| |||| |||| |||| Sbjct 214 TTTAGCTAAAGGAATTGGTG-TAGGGAAACACATAGCAAGTGATAATTTCTCCGTAGGAG 272 Query 163 GCTATCAATGGGCAATCTAT-TTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCT 221 | ||||||||| | |||| | |||| ||||| || || ||||| |||||||| || || Sbjct 273 GTTATCAATGGACTATCT-TCGTCTACCCTGACGGTAAAAATCCAGAGGATAACTCTTCT 331 Query 222 TATGTCTCCGTTTTCATTGCTCTT-GCTAGCG-ATGGTACCGATGTTAGGGCTCTCTTTG 279 || ||||| || ||||| | | || ||||| | || |||| || ||||| || || |||| Sbjct 332 TACGTCTCTGTGTTCATCG-TTTTGGCTAGTGAAT-GTACTGAAGTTAGAGCGCTTTTTG 389 Query 280 AGCTTTCT-TTGCTTGATCAGAGTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGAT 338 |||||||| ||| ||||||| |||||||||||||||||||||||||||||||| || || Sbjct 390 AGCTTTCTCTTG-TTGATCAAAGTGGTAAAGGGAAGCATAAGGTTCATAGCCATTTTAAT 448 Query 339 CGTGCTCTTGA-GAGCGGTCCTTATACACTCAAGTATC-GTGGCAGCATGTGGGGCTACA 396 ||| | ||||| | | ||||||||||| || ||||| | | || || |||||||| |||| Sbjct 449 CGTTCACTTGATG-GTGGTCCTTATACGCTTAAGTA-CAGAGGAAGTATGTGGGGATACA 506 Query 397 AGCGCTTTTTT-AGAAGA-CTTATGCTGGAAACATCTGATTTTCTGAAGGATGATTGTTT 454 |||| ||| || ||| | | | |||| || |||||||| | ||| || || ||||| || Sbjct 507 AGCG-TTTCTTCAGACGGTCCT-TGCTTGAGACATCTGACTATCTTAAAGACGATTGCTT 564 Query 455 GAAAATTAATTGTACTGTGGGAGTTGTGGTCTCAGAAATAG-ATTGCCCACGGTTACAT- 512 ||||||||||||||| || |||||||| || |||||||| | ||||||||||||||| | Sbjct 565 GAAAATTAATTGTACAGTTGGAGTTGTCGTTTCAGAAAT-GCATTGCCCACGGTTAC-TC 622 Query 513 TCTATTCATGTCCCTG-CATCTGATA-TTGGATCTCATTTCGGGATGCTT-CTGGAGAAT 569 || ||||||||||| | | || || | ||||||| ||||| || | | || ||||| | | Sbjct 623 TCGATTCATGTCCCAGAC-TCAGA-ACTTGGATCACATTTTGGAAAG-TTGCTGGATACT 679 Query 570 G-AGGACGGTTCAGATATAACTTTTAATGTCT-CTGGTGAAAAGTTCCGTGCTCACAGGT 627 | | || || ||| | || ||| | || | | ||||| ||||| | ||||| | | Sbjct 680 TTACAA-GGCTCGGATGTCACATTTGACGT-TGCCGGTGAGAAGTTTCAAGCTCATAAAT 737 Query 628 TAGTATTGGCTGCTCGATCTC 648 | || |||||||| ||||||| Sbjct 738 TGGTTTTGGCTGCACGATCTC 758 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66666323760 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5