BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927913
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03820.1 | Symbols: | SAUR-like auxin-responsive protein fa... 466 6e-131
AT3G03840.1 | Symbols: | SAUR-like auxin-responsive protein fa... 351 2e-96
AT3G03850.1 | Symbols: | SAUR-like auxin-responsive protein fa... 224 4e-58
AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-1101... 119 2e-26
> AT3G03820.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr3:976933-977223 REVERSE LENGTH=291
Length=291
Score = 466 bits (252), Expect = 6e-131
Identities = 278/291 (96%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 21 ATGGCTTTGGTAAGAGGTTTCATGGCTGCAAAGAAGATTATTGGTGGCTCAGTAGCAGGA 80
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGCTTTGGTAAGAGGTTTCATGGCTGCAAAGAAGATTCTTGGTGGCTCAGTAGCAGGA 60
Query 81 GCGAGGAAAGAAACTTCAGCGCCAAAAGGGTTTCTTGCAGTGTACGTCGGTGAGAGCCAG 140
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGAGGAAAGAAACTTCAGCACCAAAAGGGTTTCTTGCAGTGTACGTCGGTGAGAGCCAG 120
Query 141 AAGAAGAAGCAGAGACACCTTGTGCCGGTCTCATACTTGAACCAGCCTTTGTTTCAAGAT 200
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 AGGAAGAAGCAGAGACACCTTGTGCCGGTCTCATACTTGAACCAGCCTTTGTTTCAAGCT 180
Query 201 CTTCTCATTAAGGCTGAAGAAGAGTTCGGATTCAACCATCCGATGGGCGGTTTGACGATC 260
|| ||||| || ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 181 CTACTCATCAAAGCTGAAGAAGAGTTCGGATTCAATCATCCGATGGGCGGCTTGACGATC 240
Query 261 CCTTGTCCTGAAGATACCTTCCTCACTGTAACTTCTCAGATCCAAGGGTGA 311
||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 241 CCTTGTCCTGAAGATACTTTCCTCACTGTAACGTCTCAGATCCAAGGATGA 291
> AT3G03840.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr3:981072-981798 FORWARD LENGTH=727
Length=727
Score = 351 bits (190), Expect = 2e-96
Identities = 280/323 (87%), Gaps = 8/323 (2%)
Strand=Plus/Plus
Query 13 AAACAAAAATGGCTTTGGTAAGAGGTTTCATGGCTGCAAAGAAGATTA-TTGGTGGCTCA 71
||||||||||||||||||| ||| || || | | | |||| |||| || |||| ||||||
Sbjct 179 AAACAAAAATGGCTTTGGTGAGAAGTCTCTTTGTTTCAAACAAGA-TACTTGGAGGCTCA 237
Query 72 GTAGCAGGAGCGAGGAAAGAAACTTCAGCGCCAAAAGGGTTTCTTGCAGTGTACGTCGGT 131
|||||||| ||| ||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct 238 TTAGCAGGAATGAGAAAATCAACTTCAGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGG 297
Query 132 GAGAGCCAGAAGAAGAAGCAGAGACACCTT-GTGCCGGTCTCATACTTGAACCAGCCTTT 190
||||||| |||||||||||||| | ||| |||| ||||||||||||| |||||| ||
Sbjct 298 GAGAGCC---AGAAGAAGCAGAGATA-CTTAGTGCTAGTCTCATACTTGAGCCAGCCATT 353
Query 191 GTTTCAAGATCTTCTCATTAAGGCTGAAGAAGAGTTCGGATTCAACCATCCGATGGGCGG 250
||||||||||||||||| ||| | || |||||||||||||| | ||||||||||| ||
Sbjct 354 GTTTCAAGATCTTCTCAGTAAATCCGAGGAAGAGTTCGGATTTGATCATCCGATGGGGGG 413
Query 251 TTTGACGATCCCTTGTCCTGAAGATACCTTCCTCACTGTAACTTCTCAGATCCAAGGGTG 310
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 414 CTTGACGATCCCTTGTCCTGAAGATACCTTCCTCACTGTAACTTCTCGGATCCAAGGATG 473
Query 311 ATCATCATCTGAAGAAAAAGCTT 333
||||||||||||||||||| |||
Sbjct 474 ATCATCATCTGAAGAAAAA-CTT 495
> AT3G03850.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr3:983121-983751 FORWARD LENGTH=631
Length=631
Score = 224 bits (121), Expect = 4e-58
Identities = 241/297 (81%), Gaps = 15/297 (5%)
Strand=Plus/Plus
Query 18 AAAATGGCTTTGGTAAGAGGTTTC-ATGGCTGCAAAGAAGATTATTGGTGGCTCAGTAGC 76
|||||||||||||| ||| || || | || |||||||||||| |||| || || |||
Sbjct 74 AAAATGGCTTTGGTGAGAAGTCTCTTTAGC-GCAAAGAAGATTCTTGGCGGTTCTTTAGT 132
Query 77 AGGAGCGAGGA-AAGAAACTTCAGCGCCAAAAGGGTTTCTTGCAGTGTACGTCGGTGAGA 135
| | | | ||| || || ||||||||||||||||||||||||||||||| ||||
Sbjct 133 A--A---A-AACAAGCAA-GGCACCGCCAAAAGGGTTTCTTGCAGTGTACGTCGGCGAGA 185
Query 136 GCCAGAAGAAGAAGCAGAGACACCTTGTGCCGGTCTCATACTTGAACCAGCCTTTGTTTC 195
||| |||||||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct 186 GCC---AGAAGAAGCAGAGACATTTTGTACCAGTCTCATACTTGAACCAGCCTTTGTTTC 242
Query 196 AAGATCTTCTCATTAAG-GCTGAAGAAGAGTTCGGATTCAACCATCCGATGGGCGGTTTG 254
|||||||||| | || | |||||||||||| || || | |||||||||||||| |||
Sbjct 243 AAGATCTTCTAAGCAAATG-TGAAGAAGAGTTTGGTTTTGATCATCCGATGGGCGGCTTG 301
Query 255 ACGATCCCTTGTCCTGAAGATACCTTCCTCACTGTAACTTCTCAGATCCAAGGGTGA 311
|| ||||||||||||| |||||| || ||| | |||| |||||| ||||||| |||
Sbjct 302 ACAATCCCTTGTCCTGTAGATACTTTTATCAGTATAACATCTCAGCTCCAAGGATGA 358
> AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-11011792
REVERSE LENGTH=1125
Length=1125
Score = 119 bits (64), Expect = 2e-26
Identities = 82/90 (91%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 13 AAACA-AAAATGGCTTTGGTAAGAGGTTTCATGGCTGCAAAGAAGATTATTGGTGGCTCA 71
||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 613 AAACACAAAATGGCTTTGGTAAGACGTTTCTTGGCTGCAAAGAAGATTATTGGTGGCTCT 672
Query 72 GTAGCAGGAGC-GAGGAAAGAAACTTCAGC 100
||||| | | | ||||||||||||||||||
Sbjct 673 GTAGC-GAAACTGAGGAAAGAAACTTCAGC 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15683537688
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5