BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg927914

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03826.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   296    7e-80


> AT3G03826.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G43695.1); Has 
30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr3:978265-978570 FORWARD LENGTH=228
Length=228

 Score =  296 bits (160),  Expect = 7e-80
 Identities = 190/204 (93%), Gaps = 3/204 (1%)
 Strand=Plus/Plus

Query  37   ATGAAGCGTGCTTTCCTTATCTTTTTAGTTGTTATATCCGCGATGGGTATCGTAACAATT  96
            |||||| |||||||||||||| |||||||||||||||||| |||| ||||||||||||||
Sbjct  1    ATGAAGTGTGCTTTCCTTATCATTTTAGTTGTTATATCCGTGATGAGTATCGTAACAATT  60

Query  97   CAAAATGTTGAGGCAAAACGTTTATTACATGAAGAAATTCCTCAAATGATGTTGCATCAT  156
            |||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||
Sbjct  61   CAAAATGTTGAGGCAAAACGTTTATTACGTGAAGAAACTCCGCAAATTATGTTGCATCAT  120

Query  157  GAAGTTTCAACGCAAGTTATTAGACCACAAAGTCTTCTTCACTGCGAAAAAGGGTGTCGT  216
            ||||||||||||||||||||||||||||||||| || | |||||||||||| ||||| ||
Sbjct  121  GAAGTTTCAACGCAAGTTATTAGACCACAAAGT-TT-T-CACTGCGAAAAAAGGTGTGGT  177

Query  217  GTGAAATGTGTTCCCAATCCATTT  240
            |||||||||||||| |||||||||
Sbjct  178  GTGAAATGTGTTCCAAATCCATTT  201



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14125237469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5