BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927917
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20820.1 | Symbols: | pre-tRNA | chr1:7242761-7242832 REVER... 134 4e-31
AT5G18005.1 | Symbols: | pre-tRNA | chr5:5962698-5962769 REVER... 128 2e-29
AT5G18015.1 | Symbols: | pre-tRNA | chr5:5965971-5966042 REVER... 128 2e-29
AT4G39615.1 | Symbols: | pre-tRNA | chr4:18395028-18395099 FOR... 128 2e-29
AT4G17765.1 | Symbols: | pre-tRNA | chr4:9873512-9873583 REVER... 128 2e-29
AT4G17612.1 | Symbols: | pre-tRNA | chr4:9815203-9815274 REVER... 128 2e-29
AT3G03845.1 | Symbols: | pre-tRNA | chr3:981969-982040 FORWARD... 128 2e-29
AT3G03852.1 | Symbols: | pre-tRNA | chr3:984099-984170 FORWARD... 128 2e-29
AT1G61880.1 | Symbols: | pre-tRNA | chr1:22866758-22866829 REV... 128 2e-29
AT1G11640.1 | Symbols: | pre-tRNA | chr1:3914629-3914700 REVER... 128 2e-29
AT1G15450.1 | Symbols: | pre-tRNA | chr1:5309647-5309718 REVER... 128 2e-29
AT1G80250.1 | Symbols: | pre-tRNA | chr1:30174014-30174085 REV... 128 2e-29
AT5G18085.1 | Symbols: | pre-tRNA | chr5:5984377-5984448 FORWA... 122 9e-28
> AT1G20820.1 | Symbols: | pre-tRNA | chr1:7242761-7242832 REVERSE
LENGTH=72
Length=72
Score = 134 bits (72), Expect = 4e-31
Identities = 72/72 (100%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 50 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 13
Query 110 CGCCACGAATCC 121
||||||||||||
Sbjct 12 CGCCACGAATCC 1
> AT5G18005.1 | Symbols: | pre-tRNA | chr5:5962698-5962769 REVERSE
LENGTH=72
Length=72
Score = 128 bits (69), Expect = 2e-29
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 50 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 13
Query 110 CGCCACGAATCC 121
||||||| ||||
Sbjct 12 CGCCACGGATCC 1
> AT5G18015.1 | Symbols: | pre-tRNA | chr5:5965971-5966042 REVERSE
LENGTH=72
Length=72
Score = 128 bits (69), Expect = 2e-29
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 50 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 13
Query 110 CGCCACGAATCC 121
||||||| ||||
Sbjct 12 CGCCACGGATCC 1
> AT4G39615.1 | Symbols: | pre-tRNA | chr4:18395028-18395099 FORWARD
LENGTH=72
Length=72
Score = 128 bits (69), Expect = 2e-29
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 50 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 13
Query 110 CGCCACGAATCC 121
||||||| ||||
Sbjct 12 CGCCACGGATCC 1
> AT4G17765.1 | Symbols: | pre-tRNA | chr4:9873512-9873583 REVERSE
LENGTH=72
Length=72
Score = 128 bits (69), Expect = 2e-29
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 50 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 13
Query 110 CGCCACGAATCC 121
||||||| ||||
Sbjct 12 CGCCACGGATCC 1
> AT4G17612.1 | Symbols: | pre-tRNA | chr4:9815203-9815274 REVERSE
LENGTH=72
Length=72
Score = 128 bits (69), Expect = 2e-29
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 50 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 13
Query 110 CGCCACGAATCC 121
||||||| ||||
Sbjct 12 CGCCACGGATCC 1
> AT3G03845.1 | Symbols: | pre-tRNA | chr3:981969-982040 FORWARD
LENGTH=72
Length=72
Score = 128 bits (69), Expect = 2e-29
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 50 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 13
Query 110 CGCCACGAATCC 121
||||||| ||||
Sbjct 12 CGCCACGGATCC 1
> AT3G03852.1 | Symbols: | pre-tRNA | chr3:984099-984170 FORWARD
LENGTH=72
Length=72
Score = 128 bits (69), Expect = 2e-29
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 50 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 13
Query 110 CGCCACGAATCC 121
||||||| ||||
Sbjct 12 CGCCACGGATCC 1
> AT1G61880.1 | Symbols: | pre-tRNA | chr1:22866758-22866829 REVERSE
LENGTH=72
Length=72
Score = 128 bits (69), Expect = 2e-29
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 50 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 13
Query 110 CGCCACGAATCC 121
||||||| ||||
Sbjct 12 CGCCACGGATCC 1
> AT1G11640.1 | Symbols: | pre-tRNA | chr1:3914629-3914700 REVERSE
LENGTH=72
Length=72
Score = 128 bits (69), Expect = 2e-29
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 50 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 13
Query 110 CGCCACGAATCC 121
||||||| ||||
Sbjct 12 CGCCACGGATCC 1
> AT1G15450.1 | Symbols: | pre-tRNA | chr1:5309647-5309718 REVERSE
LENGTH=72
Length=72
Score = 128 bits (69), Expect = 2e-29
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 50 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 13
Query 110 CGCCACGAATCC 121
||||||| ||||
Sbjct 12 CGCCACGGATCC 1
> AT1G80250.1 | Symbols: | pre-tRNA | chr1:30174014-30174085 REVERSE
LENGTH=72
Length=72
Score = 128 bits (69), Expect = 2e-29
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 50 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 13
Query 110 CGCCACGAATCC 121
||||||| ||||
Sbjct 12 CGCCACGGATCC 1
> AT5G18085.1 | Symbols: | pre-tRNA | chr5:5984377-5984448 FORWARD
LENGTH=72
Length=72
Score = 122 bits (66), Expect = 9e-28
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 50 TGAACCCGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 109
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 72 TGAACCCGACGTGAATCGAACAAGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTG 13
Query 110 CGCCACGAATCC 121
||||||| ||||
Sbjct 12 CGCCACGGATCC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9701675557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5