BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927919
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03870.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 1314 0.0
> AT3G03870.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G18130.1);
Has 47 Blast hits to 47 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 45; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:995217-997410
FORWARD LENGTH=1334
Length=1334
Score = 1314 bits (711), Expect = 0.0
Identities = 801/843 (95%), Gaps = 12/843 (1%)
Strand=Plus/Plus
Query 1 CAAGATCGATTAAGGAGAAGATGGATCTCGAGGATTGGGAATTAGTACTCCCCAATAACA 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 284 CAAGATCGATCAAGGAGAAGATGGATCTCGAGGATTGGGAATTAGTACTCCCCAAGAACA 343
Query 61 GCTTCAAGGATCTTGATCTTGATCATGACGAGGATCATCATGGAGCGATGGTAATGGACT 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 344 GCTTCAAGGATCTTGATCTTGATCATGACGAGGATCATCATGGAGCCATGGTGATGGACT 403
Query 121 ACTTCCTCTGCCCATCTACTAAAGATCCTCTCCCAAAAACAGAGTCTCCTCCAAGAACCA 180
|||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||
Sbjct 404 ACTTCCTCTGCCCATCTACTAAAGATCCTCTCCCCAAGACAGAGTCTCCTCCAAGATCCA 463
Query 181 TAGTGGTCCCTAAAAATCTTCTTCAAGTTCCCATAGCTTGGGAAGCCGTTTTGGACCAAG 240
||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 464 AAGTGGTCCCTAAAAAGATTCTTCAAGTTCCCATAGCTTGGGAAGCCGTGTTGGATCAAG 523
Query 241 ACAACACGAAGAAACCCAATAA-CC-G----TGAACCGGAT-C-CA----GATCCGGATT 288
|||||||||||| ||||||||| || | |||||||||| | || ||||||||||
Sbjct 524 ACAACACGAAGATACCCAATAACCCTGATCTTGAACCGGATCCGCATCCGGATCCGGATT 583
Query 289 CAAAACAAACCCTTTCGACGGACTTTGTTTCGTCACCTAGAGTTTCCTTCAAGATAATGA 348
|||||| |||||||||||||||| |||||||||||| ||||||||||||||||| ||||
Sbjct 584 CAAAACCGACCCTTTCGACGGACTCTGTTTCGTCACCAAGAGTTTCCTTCAAGATCATGA 643
Query 349 AGGAGACTGAATTTGCCGACATGAAAATTGACCCACCAGCGAGGATCACGAGTCCTCTGC 408
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 AGGACACTGAATTTGCCGACATGAAAATTGACCCACCAGCGAGGATCACGAGTCCTCTGC 703
Query 409 CTCAGATCGATGCTGCTGCATCGAAACCCTCTGATTTAGAAGGAGGAGATGACGTGCGAG 468
|||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct 704 CTCAGATCGATGATGCTGCTTCGAAACCCTCTGATTTAGAAGGAGGGGATGACTTGCGAG 763
Query 469 ACAAGGAAGAAGTTGTTTTGGAGGAAGAAGATGAAGATGGTAGTGGTGGTGAGAGATTGA 528
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 ACAAGAAAGAAGTTGTTTTGGAGGAAGAAGATGAAGATGGTAGTGGTGGTGAGAGATTGA 823
Query 529 ATCTGTGGAAGGCTGGTCTCAATGGGATTGGAGCAATCTGTTCTTTTGGGGTCGCAGCTG 588
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 824 ATCTGTGGAAGGCTGGTCTCAATGGGATTGGAGCAATCTGTTCTTTTGGGGTTGCAGCTG 883
Query 589 CTGCTGCTACTGTATGTGTCTTCTTCCTCGGACACAACAATATCAAAATCTGTAAGAACA 648
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 CTGCTGCTACCGTATGTGTCTTCTTCCTCGGACACAACAATATCAAAATCTGTAAGAACA 943
Query 649 AGAACCAGATGCTTAGGTTCCAGATTTACTCCGATGATAATAAGAGGATGAAAGAAGTTG 708
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 AGAACCAGATGCTTCGGTTCCAGATTTACTCCGATGATAATAAGAGGATGAAAGAAGTTG 1003
Query 709 TGAATCATGCAACAAAGCTCAATGAAGCAAACTTTGGTATGAAAAGTGTTCCTGTCGTAA 768
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1004 TGAATCATGCAACAAAGCTCAATGAAGCAATCTTTGGTATGAAAGGTGTTCCTGTCGTAA 1063
Query 769 GAGCTCAAATATCTTTTGGGGGTCACTACGATGGACTTTGAATCTCAGCCGTCATAATAG 828
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1064 GAGCTCAAATATCTTTTGGGGGTCACTACGATGGACTTTGAATCTCAGCCATCATAATAG 1123
Query 829 TTC 831
|||
Sbjct 1124 TTC 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5