BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg927923
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03900.1 | Symbols: APK3 | adenosine-5'-phosphosulfate (APS)... 1020 0.0
> AT3G03900.1 | Symbols: APK3 | adenosine-5'-phosphosulfate (APS)
kinase 3 | chr3:1002975-1004271 REVERSE LENGTH=627
Length=627
Score = 1020 bits (552), Expect = 0.0
Identities = 603/628 (96%), Gaps = 2/628 (0%)
Strand=Plus/Plus
Query 21 ATGTCGACAGTGGGAAATTCGACGAACATATTTTGGCAAGAATCACCCATTGGGAAAACT 80
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGTCGACAGTGGGAAATTCAACGAACATATTTTGGCAAGAATCCCCCATTGGGAAAACT 60
Query 81 GAAAGGCAGAAGTTGCTAAACCAAAAGGGTTGTGTGGTGTGGATCACAGGGTTCAGTGGC 140
||||||||||||||| |||| || ||||||||||||||||||||||||||| ||||||||
Sbjct 61 GAAAGGCAGAAGTTGTTAAATCAGAAGGGTTGTGTGGTGTGGATCACAGGGCTCAGTGGC 120
Query 141 TCAGGGAAAAGCACGCTAGCTTGCTCGCTGAGTAGAGAGCTGAACAACCGGGGAAAGCTA 200
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TCAGGGAAAAGCACGTTAGCTTGCTCGCTTAGTAGAGAGCTGAACAACCGGGGAAAGCTA 180
Query 201 TCATATATTCTTGATGGGGACAATCTTCGTCATGGTTTGAACAAAGATCTTGGTTTCAAG 260
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCATATATTCTTGATGGTGACAATCTTCGTCATGGTTTGAACAAAGATCTTGGTTTCAAG 240
Query 261 GCAGAGGATAGAGTGGAAAATATACGCAGGGTCGGAGAAGTAGCCAAACTCTTTGCAGAT 320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GCAGAGGATAGAGTGGAAAATATACGCAGGGTCGGAGAAGTAGCCAAACTCTTTGCGGAT 300
Query 321 GCTGGTTTGATCTGTATTGCCAGCCTCATATCGCCGTATAGAAAAGACCGTGACGCCTGC 380
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GCTGGTTTAATCTGTATTGCCAGCCTCATATCCCCGTATAGAAAAGACCGTGACGCCTGC 360
Query 381 AGGGAAATGATGCAGGATTCATCTTTTATTGAGGTTTTCATGAACATGTCTCTGCAATTG 440
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGGAAATGATACAGAATTCATCTTTTATTGAGGTTTTCATGAACATGTCTCTGCAATTG 420
Query 441 TGTGAAGCAAGAGACCCTAAAGGCCTGTACAAGCTTGCACGTGCAGGGAAGATCAAAGGT 500
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 421 TGTGAAGCAAGGGACCCTAAAGGCCTATACAAGCTTGCACGTGCAGGAAAGATCAAAGGT 480
Query 501 TTCACTGGAATAGATGATCCGTATGAATCTCCCTTGAATTGTGAGATAGAGCTGAAAGAG 560
||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 481 TTCACAGGAATAGATGATCCGTATGAGTCTCCCTTGAACTGTGAGATAGAGTTGAAAGAG 540
Query 561 AAAGAGGGAGAGTGTCCTTCCCCTGTAGCTATGGCTGAGGAAGTCG-TCTCTTATTTAGA 619
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 541 AAAGAGGGAGAGTGTCCTTCCCCTGTAGCTATGGCTGAGGAAGT-GATCTCTTATCTAGA 599
Query 620 AGACAAAGGCTTCCTTCAAAACGAGTAA 647
||||||||| ||||||||||||||||||
Sbjct 600 AGACAAAGGTTTCCTTCAAAACGAGTAA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32401024815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5